Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c08r
(733 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M25545-4|AAA28621.1| 361|Drosophila melanogaster protein ( D.me... 34 0.23
M25545-3|AAA28624.1| 365|Drosophila melanogaster protein ( D.me... 34 0.23
M25545-2|AAA28623.1| 360|Drosophila melanogaster protein ( D.me... 34 0.23
M25545-1|AAA28622.1| 364|Drosophila melanogaster protein ( D.me... 34 0.23
M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protei... 34 0.23
AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p pro... 34 0.23
AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF... 34 0.23
AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD... 34 0.23
AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC... 34 0.23
AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB... 34 0.23
AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE... 34 0.23
AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA... 34 0.23
AY075486-1|AAL68296.1| 142|Drosophila melanogaster RE40068p pro... 29 8.6
AE014134-2067|AAF53098.1| 142|Drosophila melanogaster CG4922-PA... 29 8.6
>M25545-4|AAA28621.1| 361|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 361
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 313 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 359
>M25545-3|AAA28624.1| 365|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 365
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 363
>M25545-2|AAA28623.1| 360|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 360
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 312 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 358
>M25545-1|AAA28622.1| 364|Drosophila melanogaster protein (
D.melanogaster Hrb98DElocus encoding heterogeneous
nuclear ribonucleoproteinisoforms, exon 5. ).
Length = 364
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 316 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 362
>M15766-1|AAA70426.1| 365|Drosophila melanogaster unknown protein
protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 363
>AY061448-1|AAL28996.1| 361|Drosophila melanogaster LD38464p
protein.
Length = 361
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 313 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 359
>AE014297-4248|AAN14144.1| 361|Drosophila melanogaster CG9983-PF,
isoform F protein.
Length = 361
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 313 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 359
>AE014297-4247|AAN14143.1| 361|Drosophila melanogaster CG9983-PD,
isoform D protein.
Length = 361
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 313 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 359
>AE014297-4246|AAN14142.1| 365|Drosophila melanogaster CG9983-PC,
isoform C protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 363
>AE014297-4245|AAF56801.1| 365|Drosophila melanogaster CG9983-PB,
isoform B protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 317 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 363
>AE014297-4244|AAN14141.1| 360|Drosophila melanogaster CG9983-PE,
isoform E protein.
Length = 360
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 312 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 358
>AE014297-4243|AAF56800.2| 364|Drosophila melanogaster CG9983-PA,
isoform A protein.
Length = 364
Score = 33.9 bits (74), Expect = 0.23
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 326 GQERXGH*INHNRRQXWYGSG-VTAGSGDHSRFIGIHRGLGSGGRVR 189
G +R G N+NR Q + G G AG G+ + G ++G +GG R
Sbjct: 316 GPQRGGGNFNNNRMQPYQGGGGFKAGGGNQGNYGGNNQGFNNGGNNR 362
>AY075486-1|AAL68296.1| 142|Drosophila melanogaster RE40068p
protein.
Length = 142
Score = 28.7 bits (61), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 272 GSGVTAGSGDHSRFIGIHRGLGSGGRVRYVAEGECGGEL 156
G G G G F GI G GG++ + +G GG++
Sbjct: 24 GQGGYGGQGGFGGFGGIGGQAGFGGQIGFTGQGGVGGQV 62
>AE014134-2067|AAF53098.1| 142|Drosophila melanogaster CG4922-PA
protein.
Length = 142
Score = 28.7 bits (61), Expect = 8.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 272 GSGVTAGSGDHSRFIGIHRGLGSGGRVRYVAEGECGGEL 156
G G G G F GI G GG++ + +G GG++
Sbjct: 24 GQGGYGGQGGFGGFGGIGGQAGFGGQIGFTGQGGVGGQV 62
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,655,695
Number of Sequences: 53049
Number of extensions: 641165
Number of successful extensions: 1825
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3293648160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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