Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40059-3|AAP68936.1|  280|Caenorhabditis elegans Forkhead transc...    30   1.5  
U40059-2|AAA81139.2|  300|Caenorhabditis elegans Forkhead transc...    30   1.5  
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    28   5.9  

>U40059-3|AAP68936.1|  280|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 9, isoform b protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 261 YSRVRRSQPFYRHTPGSWKWRS 196
           Y  +R   P+YRH P  W W++
Sbjct: 73  YQVIRLLHPYYRHRPDQWGWQN 94


>U40059-2|AAA81139.2|  300|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 9, isoform a protein.
          Length = 300

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 261 YSRVRRSQPFYRHTPGSWKWRS 196
           Y  +R   P+YRH P  W W++
Sbjct: 93  YQVIRLLHPYYRHRPDQWGWQN 114


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -2

Query: 339 TRLLGARAKXSLNQSQSAPALV-WKRSYSRVRRSQPFYRHTPGSWKWRSCT 190
           TRL       S++ S S   +V ++R+   ++ S  FY++T G W  +SCT
Sbjct: 42  TRLNHDPLYISIDVSDSIRLIVDFQRADLNMQASLTFYKNTVGQWNLQSCT 92


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 162 TTTFPLSDIAYTTSTSKTPVYADKTAVIA*PGCNSASIPXLAPI 293
           TTT P + +A  T+T+ T   A  TAV      N+   P   P+
Sbjct: 364 TTTLPTTSLALETTTTATRTTAKITAVATVARTNTTQPPTTTPL 407


>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 479 HFDRFIGGVLKVLRSDYSRVLG 544
           H+++FIGG+L +   DY ++ G
Sbjct: 155 HYEKFIGGILMLTLKDYKKLNG 176


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 479 HFDRFIGGVLKVLRSDYSRVLG 544
           H+++FIGG+L +   DY ++ G
Sbjct: 155 HYEKFIGGILMLTLKDYKKLNG 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,335,564
Number of Sequences: 27780
Number of extensions: 304011
Number of successful extensions: 840
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)