Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.32 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 22/95 (23%), Positives = 36/95 (37%)
 Frame = -3

Query: 299 NHNRRQXWYGSGVTAGSGDHSRFIGIHRGLGSGGRVRYVAEGECGGELQEVPQRTPLXGT 120
           N+N      G+G  A + +++  +  H GLG  G      E +   E Q  P    L GT
Sbjct: 249 NNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGT 308

Query: 119 XDTEXXXXXXXNQ*VHSDGNHKFRFQCRRVXKSFD 15
             T        +  + +  + K +F+      S D
Sbjct: 309 TITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSD 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 161 HHHIPPQRHSVHDLHFQDP 217
           HHH   Q  S+  LH++ P
Sbjct: 351 HHHHHHQTQSLQHLHYRQP 369


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 333 LLGARAKXSLNQSQSAPALVWKRSYSRVRRSQP 235
           L+ A        S    A VW   Y+RV++S P
Sbjct: 51  LIKALLTVQAKDSNVLAAKVWNGQYARVQQSMP 83


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 297 IDSVTXSLLPQVDVYEKPVLPLTLVNIT 380
           ++ V+ +++P      KP   L L NIT
Sbjct: 78  VEKVSTTIVPTTQEINKPFKRLELFNIT 105


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 315 KXSLNQSQSAPALVWKRSYS 256
           K  L QSQS+P  V +R  S
Sbjct: 352 KPELGQSQSSPKFVARREES 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,067
Number of Sequences: 438
Number of extensions: 3833
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)