Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08r
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02630.1 68417.m00357 protein kinase family protein contains ...    30   1.4  
At3g49590.2 68416.m05420 expressed protein                             29   4.2  
At3g49590.1 68416.m05419 expressed protein                             29   4.2  
At5g18410.2 68418.m02167 expressed protein similar to p53 induci...    28   7.3  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    28   7.3  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    28   7.3  
At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ...    28   7.3  
At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to e...    27   9.7  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   9.7  

>At4g02630.1 68417.m00357 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 492

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 371 HQSE-R*DRLLVHVYLGQERXGH*INHNRRQXWYGSGVTAGSGD 243
           HQ++ R D   +H+ +G++   H I +  R  W GSG  +GSGD
Sbjct: 90  HQNQQREDDNKIHIEIGKD---HRIAYPERGGWTGSGSGSGSGD 130


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 667 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 512
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 667 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 512
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1017

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -1

Query: 409 ITQEIEYDINVMFTKVSGKTGFSYTSTWGKSEXVTESITIGASXGMEAELQP 254
           I  E+++  ++  +++S ++ F+Y  +W  SE +  S       G +  +QP
Sbjct: 688 IEAEVDHGFDIFVSRLS-ESIFTYYKSWSASELLDPSFLFALDNGEKFSIQP 738


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -1

Query: 409 ITQEIEYDINVMFTKVSGKTGFSYTSTWGKSEXVTESITIGASXGMEAELQP 254
           I  E+++  ++  +++S ++ F+Y  +W  SE +  S       G +  +QP
Sbjct: 688 IEAEVDHGFDIFVSRLS-ESIFTYYKSWSASELLDPSFLFALDNGEKFSIQP 738


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +3

Query: 165 TTFPLSDIAYTTSTSKTPVYADKTAVIA*PGCNSASIPXLAPIVIDSVTXSLLPQVDVYE 344
           T  P +  A TTS +K+P     T   A     SAS P  +P     V+ S  P   V E
Sbjct: 29  TKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPPPTPVPE 88

Query: 345 -KPVLPLTLVN 374
             P +P  +V+
Sbjct: 89  SSPPVPAPMVS 99


>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 391

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -1

Query: 694 LKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKN 536
           +K  VR    +  SGV L  P PW   +   +F+ + + L V++A  K+ +KN
Sbjct: 41  IKGYVRVTNKQDTSGVGLDKPNPWA--FDTTQFDNILKKLKVQAAPTKT-SKN 90


>At5g39280.1 68418.m04757 expansin, putative (EXP23) similar to
           expansin2 GI:4884433 from [Lycopersicon esculentum];
           alpha-expansin gene family, PMID:11641069
          Length = 259

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 730 DDVTKFNIXDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKK 605
           DDV   N  D +  DA  T++G    G   +    +GDL+K+
Sbjct: 26  DDVVSPNGLDSSWYDARATFYGDIHGGETQQGACGYGDLFKQ 67


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = -3

Query: 548 HNQEPGYNHYAGL*ERLQ*NDQSEHRYHAHSRKYFNHNMD 429
           H  +  ++ ++   E    N   EH+ H+H+ +  NHN D
Sbjct: 595 HEHDHHHHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHD 634


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,608,337
Number of Sequences: 28952
Number of extensions: 291203
Number of successful extensions: 765
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)