Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    26   0.20 
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.20 
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    22   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.4  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    21   7.4  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 328 TDNTLLTCSNLYFLYRSPHGVGLFK*TPDGLFPKYVRTAS 209
           T N L T S+   LY +   V  F  +   +FP Y+RT S
Sbjct: 33  TSNYLYTPSSTIDLYNTS-SVSNFNESSSSVFPNYIRTTS 71


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 328 TDNTLLTCSNLYFLYRSPHGVGLFK*TPDGLFPKYVRTAS 209
           T N L T S+   LY +   V  F  +   +FP Y+RT S
Sbjct: 33  TSNYLYTPSSTIDLYNTS-SVSNFNESSSSVFPNYIRTTS 71


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 568 VDVYEKPVLPLTLVNITFIS 509
           V VY+ PVL L L   T++S
Sbjct: 125 VKVYQAPVLQLFLYIFTYLS 144


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 404 IGGVLKVLRSDYSRVLGYGFESRRF 330
           +GG        YSR++G G   RRF
Sbjct: 712 LGGWTDSAGDKYSRLVGDGSARRRF 736



 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 234  SRNTFALHPSNCHR 193
            S N FA +P +C R
Sbjct: 1280 SENAFAAYPGDCTR 1293


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 229 SGRVRPES---T*KVQRHGAICTRSTNSNRSVGC 321
           S  +RP S   T +V R   +C  ST + R+ GC
Sbjct: 903 SSALRPASGGTTARVVR--CVCAGSTGTRRATGC 934


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 225 YFGKSPSGVYL 257
           + G+SP+G+YL
Sbjct: 3   FLGESPNGIYL 13


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,271
Number of Sequences: 336
Number of extensions: 2245
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14099535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)