BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10c08f (570 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 27 2.6 SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 26 4.5 SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 4.5 SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 25 5.9 SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 25 5.9 >SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces pombe|chr 2|||Manual Length = 1466 Score = 26.6 bits (56), Expect = 2.6 Identities = 16/62 (25%), Positives = 33/62 (53%) Frame = +3 Query: 237 SPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQDFENASNKTIK 416 SP+ V +K G +++Y+F + S+V+ S + + ++TT D ENA ++ Sbjct: 1147 SPTNV-IKYSADEGRTWQEYQFSEKSKVVVDVSTKPSGVGHQVLLLTTDD-ENAPISSVL 1204 Query: 417 VN 422 ++ Sbjct: 1205 ID 1206 >SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual Length = 614 Score = 25.8 bits (54), Expect = 4.5 Identities = 10/39 (25%), Positives = 22/39 (56%) Frame = -3 Query: 394 FSKSCVVIIAGFLVMDLSRADLTDNTLLTCSNLYFLYRS 278 F ++ V +I+GFL+ + +++ D+ + +LY S Sbjct: 344 FQENVVSLISGFLLKEYEKSNFLDSKFYVLIDFLYLYLS 382 >SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1389 Score = 25.8 bits (54), Expect = 4.5 Identities = 10/46 (21%), Positives = 23/46 (50%) Frame = +3 Query: 117 PDITVTYAGVQVDLISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVY 254 PD+ YA + ++ +D + D + A++ Y G++P+ + Sbjct: 1033 PDVNYWYADTMLHAVNTEDFVTTDGDIWSATYAIKRYLGENPTDTF 1078 >SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces pombe|chr 3|||Manual Length = 215 Score = 25.4 bits (53), Expect = 5.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 296 VLLVQIAPWRWTFQVDSGRTLPEIRS 219 VL V + RW F+VD G + E R+ Sbjct: 12 VLTVTVLTLRWMFRVDKGGEVSESRT 37 >SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1|||Manual Length = 996 Score = 25.4 bits (53), Expect = 5.9 Identities = 16/63 (25%), Positives = 33/63 (52%) Frame = +3 Query: 111 DNPDITVTYAGVQVDLISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYK 290 +N IT Q + + D+ ++ +D +++ VRT F ++ S + +++ P G +K Sbjct: 258 NNTPITRGTIQAQFLIKTFDECSRLGLDSA-MEEKVRTLFPEATSMLVVETVLPEGPSFK 316 Query: 291 KYK 299 K K Sbjct: 317 KLK 319 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,033,814 Number of Sequences: 5004 Number of extensions: 38396 Number of successful extensions: 101 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 101 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 242064240 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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