Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0643 - 4708245-4708355,4708456-4708800,4709124-4709700,470...    29   3.4  
01_06_0718 - 31467530-31467892,31468017-31468178,31468268-314684...    28   6.0  

>03_01_0643 -
           4708245-4708355,4708456-4708800,4709124-4709700,
           4709780-4710462,4710618-4710980,4712199-4712530,
           4712856-4713048,4713748-4713790,4713964-4714052,
           4714186-4714301,4714816-4714935,4715538-4715577
          Length = 1003

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 252 YLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNP 365
           Y+ +P+P G   K Y  +++ ++LSV+   +++   NP
Sbjct: 505 YMDAPSPLGSTNKIYLQKRLDKLLSVEQDEIQTTLSNP 542


>01_06_0718 -
           31467530-31467892,31468017-31468178,31468268-31468415,
           31468536-31468612,31468693-31468763,31468965-31469051,
           31469138-31469602,31470357-31470659,31471151-31471202
          Length = 575

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 275 PWRWTFQVDSGRTLPEIRSHCILQIVIVDIKLSDVIFGY 159
           P RW   V S + L  +   C  +I+  DIK ++++  Y
Sbjct: 283 PRRWKIAVGSAKGLAYLHEDCHPKIIHRDIKAANILLDY 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,580,045
Number of Sequences: 37544
Number of extensions: 233148
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)