Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   30   1.2  
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 28   6.2  
SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)                       27   8.2  
SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                27   8.2  

>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 288 CTDRPMALDFSSRLRTDSSRNTFALHPSNCHRRY 187
           CT  P+AL  SS+L  DS  N F +HP   +++Y
Sbjct: 5   CTFTPIALLLSSKLDFDSPEN-FLIHPGLIYQQY 37


>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 105 GIDNPDITVTYAGVQVD--LISEDDVTKFNIDDDNL 206
           GI N D T  Y  V  D  +I++DD     +DDDN+
Sbjct: 235 GIVNDDDTYVYLAVDDDDNVITDDDFVVIGVDDDNV 270


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 186  NIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVS-RVLSVKSARLKSITKN 362
            N DD N  D + +Y     S  Y  SPT   +LY    F ++S   L     +L   + N
Sbjct: 854  NQDDHNRNDLLASYVTFVFSAPYTLSPTATPELYPGDGFSRISASSLHAPHTKLTMSSSN 913

Query: 363  PAI 371
            P +
Sbjct: 914  PQL 916


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 476 SLSPCC--G*SIFDCVRDTGVHFDRFIGGVLKVLRSDYSRVLGYGF 345
           SL+ CC  G  I + +R   +HFD+ I G+   + S     LG+ +
Sbjct: 41  SLNICCDSGGVILEVLRGIRMHFDKMIKGLTGAMASKAQLGLGHSY 86


>SB_39323| Best HMM Match : PPR (HMM E-Value=7.8)
          Length = 493

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 211 MQCERISGRVRPEST*KVQRHGAICTRS 294
           M  E+ SG+V+PE+  ++Q H A C RS
Sbjct: 452 MMLEKESGKVKPEAAIQLQ-HAASCLRS 478


>SB_14153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +3

Query: 339 RLKSITKNPAIITTQDFENASNK--TIKVNTGIXXXXXXXXXXXXXE--AKAFSITQEIE 506
           R+KS+ K   +   + F+N  +K  T+ +  G+                AKA+++ + IE
Sbjct: 161 RVKSLAKETIVANARFFDNDISKVPTMALTVGVQTVMDAKEVMILITGVAKAYALHRSIE 220

Query: 507 YDINVMFT 530
             +N MFT
Sbjct: 221 GGVNHMFT 228


>SB_7011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 547

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 348 SITKNPAIITTQDFENASNKTIK 416
           S++ NP +I  + +EN SNKTI+
Sbjct: 387 SLSVNPLLIPIRRYENDSNKTIR 409


>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 737

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 259 KVQRHGAICTRSTNSNRSVGCY 324
           ++Q+HG ICT+  N N  +  Y
Sbjct: 266 QIQQHGGICTQMQNGNLHLSAY 287


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,392,887
Number of Sequences: 59808
Number of extensions: 297587
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)