Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AC006671-5|AAF39915.1|  349|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein...    28   4.1  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    27   7.2  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    27   7.2  

>Z78410-1|CAB01638.2|  330|Caenorhabditis elegans Hypothetical
           protein C51E3.1 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
 Frame = +3

Query: 111 DNPDIT---VTYAGVQVDLISEDDVTKFNIDDDNLKDAVRTYFGKSP--SGVYLKSPTPW 275
           DN DI     TYAG+ V+  +  +V  F   +   ++A+R  FG+S     ++ ++ T  
Sbjct: 234 DNVDIAHLIQTYAGITVNFAAASNVFVFYSINSEYREAIRALFGQSKKIGAIHTETSTSQ 293

Query: 276 GDLYKKYKFEQVSRVLS----VKSARLKSITKNPAIIT 377
             ++   + + VS +LS    V S++L S   NP  +T
Sbjct: 294 EVVHNSKRSKSVS-ILSMPKFVSSSKLSS--TNPRRMT 328


>AC006671-5|AAF39915.1|  349|Caenorhabditis elegans Hypothetical
           protein K08A2.2 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/93 (23%), Positives = 38/93 (40%)
 Frame = +3

Query: 135 YAGVQVDLISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVS 314
           +A   V  ++ DDV       D   D+   Y G   +    +    W D +  YKF    
Sbjct: 18  FAKKSVKNLTNDDVDVLTNPSDEYVDSFMKYHGNGRAVFKREDLAQWRDSFPDYKF---- 73

Query: 315 RVLSVKSARLKSITKNPAIITTQDFENASNKTI 413
           +V+S+K A    +     + T +  + + NK+I
Sbjct: 74  KVISLKGA--PRVIATAHLCTFRPIDPSINKSI 104


>Z29095-5|CAA82350.1|  289|Caenorhabditis elegans Hypothetical
           protein R10E11.4 protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 419 HFDRFIGGVLKVLRSDYSRVLG 354
           H+++FIGG+L +   DY ++ G
Sbjct: 155 HYEKFIGGILMLTLKDYKKLNG 176


>AJ005867-1|CAA06744.1|  289|Caenorhabditis elegans Sqv-3 protein
           protein.
          Length = 289

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 419 HFDRFIGGVLKVLRSDYSRVLG 354
           H+++FIGG+L +   DY ++ G
Sbjct: 155 HYEKFIGGILMLTLKDYKKLNG 176


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 ISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKK 293
           ++EDD  KF    D +       FG   SG   K+ +  GD +KK
Sbjct: 659 VNEDDRLKFTAPQDGILLNKARQFGNIESGPCAKNSSIVGDSFKK 703


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 ISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKK 293
           ++EDD  KF    D +       FG   SG   K+ +  GD +KK
Sbjct: 663 VNEDDRLKFTAPQDGILLNKARQFGNIESGPCAKNSSIVGDSFKK 707


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 ISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKK 293
           ++EDD  KF    D +       FG   SG   K+ +  GD +KK
Sbjct: 663 VNEDDRLKFTAPQDGILLNKARQFGNIESGPCAKNSSIVGDSFKK 707


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 ISEDDVTKFNIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKK 293
           ++EDD  KF    D +       FG   SG   K+ +  GD +KK
Sbjct: 659 VNEDDRLKFTAPQDGILLNKARQFGNIESGPCAKNSSIVGDSFKK 703


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,229,371
Number of Sequences: 27780
Number of extensions: 215602
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)