Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              22   4.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.6  

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +3

Query: 123 ITVTYAGVQVDLISEDDVTKFNIDDDNLK 209
           I +   G+   +I++ +  K NI+D+N++
Sbjct: 32  ICMAKTGINKQIINDVNDGKINIEDENVQ 60


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 225 TFALHPSNC 199
           TF LHPS C
Sbjct: 13  TFLLHPSRC 21


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 225 TFALHPSNC 199
           TF LHPS C
Sbjct: 13  TFLLHPSRC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,102
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)