Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c08f
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ...    30   1.2  
At3g49590.2 68416.m05420 expressed protein                             29   2.9  
At3g49590.1 68416.m05419 expressed protein                             29   2.9  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    28   5.0  
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family...    27   6.7  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   6.7  
At1g33260.2 68414.m04112 protein kinase family protein contains ...    27   6.7  
At1g33260.1 68414.m04111 protein kinase family protein contains ...    27   6.7  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    27   6.7  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    27   6.7  
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal...    27   8.8  

>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 391

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 192 DDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKN 362
           D   +K  VR    +  SGV L  P PW   +   +F+ + + L V++A  K+ +KN
Sbjct: 37  DKQGIKGYVRVTNKQDTSGVGLDKPNPWA--FDTTQFDNILKKLKVQAAPTKT-SKN 90


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 231 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 386
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 231 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 386
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 175 SLSLISTMTI*RMQCERISGRVRP 246
           SLSL+ T+T+ R+   R+SG + P
Sbjct: 313 SLSLVKTLTVLRLDRNRLSGEIPP 336


>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
           protein 
          Length = 426

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 105 GIDNPDITVTYAGVQVDLISEDDVTKFNIDDDNLKD 212
           G+  P   +    VQ+D++ +DD + ++ DD +  D
Sbjct: 389 GLHRPPDVIQVRAVQLDILEDDDSSDYSSDDASSDD 424


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 350 HNQEPGYNHYAGL*ERLQ*NDQSEHRYHAHSRKYFNHNMD 469
           H  +  ++ ++   E    N   EH+ H+H+ +  NHN D
Sbjct: 595 HEHDHHHHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHD 634


>At1g33260.2 68414.m04112 protein kinase family protein contains
           Pfam profile: PF00069: Eukaryotic protein kinase domain
          Length = 348

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 284 QIAPWR----WTFQVDSGRTLPEIRSHCILQIVIVDIKLSDVIFGYQVNLHTC 138
           Q+ PWR      FQV   + +  I   C  QIV  DIK S+++     N   C
Sbjct: 133 QVLPWRNRTAIAFQV--AQAIEHIHEKCSPQIVHGDIKSSNILLDKHFNSKLC 183


>At1g33260.1 68414.m04111 protein kinase family protein contains
           Pfam profile: PF00069: Eukaryotic protein kinase domain
          Length = 349

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -2

Query: 284 QIAPWR----WTFQVDSGRTLPEIRSHCILQIVIVDIKLSDVIFGYQVNLHTC 138
           Q+ PWR      FQV   + +  I   C  QIV  DIK S+++     N   C
Sbjct: 134 QVLPWRNRTAIAFQV--AQAIEHIHEKCSPQIVHGDIKSSNILLDKHFNSKLC 184


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 135 YAGVQVDLISEDDVTK--FNIDDDNLKDAVRTYFGKSPSGVYLKSP-TPWGDLYKKYKFE 305
           +AG++   I+ D++ +  F   D +L D  + +  ++    Y     +P+G+ + K K  
Sbjct: 87  FAGIRAITINSDEIAREAFRERDADLADRPQLFIMETIGDNYKSMGISPYGEQFMKMKRV 146

Query: 306 QVSRVLSVKSARL 344
             + ++SVK+ ++
Sbjct: 147 ITTEIMSVKTLKM 159


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +3

Query: 135 YAGVQVDLISEDDVTK--FNIDDDNLKDAVRTYFGKSPSGVYLKSP-TPWGDLYKKYKFE 305
           +AG++   I+ D++ +  F   D +L D  + +  ++    Y     +P+G+ + K K  
Sbjct: 87  FAGIRAITINSDEIAREAFRERDADLADRPQLFIMETIGDNYKSMGISPYGEQFMKMKRV 146

Query: 306 QVSRVLSVKSARL 344
             + ++SVK+ ++
Sbjct: 147 ITTEIMSVKTLKM 159


>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
           catalytic subunit, putative similar to SP|O48653 DNA
           polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
           sativa}; contains Pfam profiles: PF03175 DNA polymerase
           type B, organellar and viral, PF00136 DNA polymerase
           family B, PF03104 DNA polymerase family B, exonuclease
           domain
          Length = 1492

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 162 SEDDVTKFNIDDDN-----LKDAVRTYFGKSPSGVYLKSPTPWGDLYK 290
           S +  T+F++D D      + DA    FG S   +YL      GD YK
Sbjct: 330 SSEGKTEFDLDADGSLRFFILDAYEEAFGASMGTIYLFGKVKMGDTYK 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,967
Number of Sequences: 28952
Number of extensions: 195819
Number of successful extensions: 455
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)