Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07r
         (736 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    23   1.9  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   3.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    23   3.4  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   3.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   3.4  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   4.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.8  

>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 98  ANDFI*SVIFIIKKRTQYS*PKSTYYY 18
           A DF+ S+ F I + TQY   K+T Y+
Sbjct: 326 ARDFLASLAFRIFQSTQYVRHKNTPYH 352


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 232 NNWVVKIIYLKLQRQLSHSILFRYLKHNKSYQ 327
           N+ V   IYL   R+L   +L  Y   +K+Y+
Sbjct: 311 NSCVNPWIYLAFNRELPRLLLRHYTASSKNYR 342


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 39  LGILCSFFYNKYNRLDKIICYL 104
           L + C    + +   DK+ICY+
Sbjct: 9   LALFCLHVQHSHGATDKVICYV 30


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 610 GRPPRFDSACNGDSGS 563
           G+PP    + NGD G+
Sbjct: 39  GKPPELTGSTNGDGGA 54


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 610 GRPPRFDSACNGDSGS 563
           G+PP    + NGD G+
Sbjct: 195 GKPPELTGSTNGDGGA 210


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 200 TCFRFLNSNIKFSYLR 153
           +C+R L+ N +F YLR
Sbjct: 314 SCYRLLSRNGQFIYLR 329


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/44 (25%), Positives = 20/44 (45%)
 Frame = +2

Query: 464  PGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAATITIASRVE 595
            PG+  +  V  L+    +  R   +  +   EP+ T+TI +  E
Sbjct: 950  PGDQTEAGVFTLRPATTYHIRIVAENEIGSSEPSETVTIITAEE 993


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 443 PVPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAAT 571
           P+  S  P +  + S   L  +  HP   PH P L+ H    T
Sbjct: 211 PISTSSLPSDFYRFSPTGL--IPPHPGLSPHPPHLSSHPAIVT 251


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +2

Query: 443 PVPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAAT 571
           P+  S  P +  + S   L  +  HP   PH P L+ H    T
Sbjct: 103 PISTSSLPSDFYRFSPTGL--IPPHPGLSPHPPHLSSHPAIVT 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,065
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)