Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c07r
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12588| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 8e-06
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 45 6e-05
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 42 5e-04
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 40 0.002
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 40 0.002
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0) 39 0.005
SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45) 39 0.005
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.006
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.011
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.019
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.026
SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16) 36 0.034
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.14
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 33 0.24
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 30 1.7
SB_8091| Best HMM Match : C1_4 (HMM E-Value=1.3) 30 1.7
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 30 2.2
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 29 3.0
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 5.2
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 29 5.2
SB_13844| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
>SB_12588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 48.0 bits (109), Expect = 8e-06
Identities = 31/67 (46%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = -1
Query: 625 MICAKGRPPRFDSACNGDSGSGLVDGEGR---LVGVASWVENDAFECRNGNLVVFSRVSR 455
M+C G SACNGDSG LV EG L GVASWV +C N V++RVS
Sbjct: 109 MMCVGGAG---SSACNGDSGGPLVCEEGGKWVLRGVASWVATS--QCPVNNYSVYARVSS 163
Query: 454 ARDWIRE 434
DWI++
Sbjct: 164 DVDWIQD 170
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 45.2 bits (102), Expect = 6e-05
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = -1
Query: 664 EVCS-KLEQY--NSLDMICAKGRPPRFDSACNGDSGSGLVDGEGR---LVGVASWVENDA 503
E C+ KL+++ + MICA G SAC+GDSG LV EG L G SW +
Sbjct: 467 ETCAIKLDKFAADKTTMICAGGSG---SSACSGDSGGPLVCHEGGTWVLRGAVSW--GTS 521
Query: 502 FECRNGNLVVFSRVSRARDWIREVT 428
C V ++R+S DWI +T
Sbjct: 522 HSCPGRMFVAYARISSHIDWIERIT 546
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYN-SLDMICAKGRPPRFDSACNGDSGSG 560
+GT GG + ++ + ++ C + S DMICA G P C GDSG
Sbjct: 761 WGTLSSGGSQPEALNQAVVPLRTRSECERSYPGKISADMICA-GNPEGGVDTCQGDSGGP 819
Query: 559 LVDGEGR---LVGVASWVENDAFECRNGNLVVFSRVSRARDWIREV 431
LV G L GV SW AF + G V++ V + + W+ V
Sbjct: 820 LVCQHGNQWFLTGVTSWGHGCAFAGKYG---VYAGVQQLKQWVFHV 862
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 41.9 bits (94), Expect = 5e-04
Identities = 30/65 (46%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = -1
Query: 625 MICAKGRPPRFDSACNGDSGSGLVDGEGR---LVGVASWVENDAFECRNGNLVVFSRVSR 455
MICA G SACNGDSG L E L GVASWV A C V++RVS
Sbjct: 458 MICAGGAG---SSACNGDSGGPLQCLENERWVLRGVASWV--TAETCPGNTFSVYARVSS 512
Query: 454 ARDWI 440
+WI
Sbjct: 513 YSNWI 517
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSL--DMICAKGRPPRFDSACNGDSGS 563
+G G ++ +E+ S EVC+ + YN D G P +C GDSG
Sbjct: 123 WGKTAEGSPYSPVLNELEVDIVSKEVCNANDSYNGTINDRYFCAGFPQGGRDSCGGDSGG 182
Query: 562 GLV----DGEGRLVGVASWVENDA 503
LV DG+ L GV SW E A
Sbjct: 183 PLVCSNADGQYVLRGVVSWGEGCA 206
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 40.3 bits (90), Expect = 0.002
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = -1
Query: 625 MICAKGRPPRFDSACNGDSGSGLV----DGEGRLVGVASWVENDAFECRNGN-LVVFSRV 461
M+CA + CNGDSG V G+ L GV SW + EC + N VF+RV
Sbjct: 210 MLCAGDAGKTGKNGCNGDSGGPFVCRNTAGQWVLQGVVSWGDP---ECSSANHFSVFARV 266
Query: 460 SRARDWIREV 431
S R WI +V
Sbjct: 267 SVLRHWIDKV 276
>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 537
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -1
Query: 589 SACNGDSGSGLV---DGEGRLVGVASWVENDAFECRNGNLVVFSRVSRARDWIREVT 428
+ C+GDSG LV G L+G++SW + C VFS V A DWIRE T
Sbjct: 478 AVCSGDSGGPLVCERGGRWFLMGLSSW----GWVCPQARPKVFSDVLAAMDWIREKT 530
>SB_3824| Best HMM Match : Trypsin (HMM E-Value=2.8026e-45)
Length = 234
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = -1
Query: 622 ICAKGRPPRFDSACNGDSGSGLV---DGEGRLVGVASWVENDAFECRNGNLVVFSRVSRA 452
+CA P AC GDSG LV +G+ L GV S+ A C + V+++VS
Sbjct: 114 LCAGEAKPNAAGACQGDSGGPLVCERNGQWTLYGVVSF---GAGNCEVTSYTVYTKVSNY 170
Query: 451 RDWI 440
DWI
Sbjct: 171 LDWI 174
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -1
Query: 589 SACNGDSGSGLV---DGEGRLVGVASWVENDAFECRNGNLVVFSRVSRARDWIREVT 428
+ C+GDSG LV G L+G++SW + C VFS V A DWIRE T
Sbjct: 727 AVCSGDSGGPLVCERGGRWFLMGLSSW----GWVCPQARPKVFSDVLAAMDWIREKT 779
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 38.3 bits (85), Expect = 0.006
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Frame = -1
Query: 718 GGVMRKDMHAMELSTQSDEVCSKLEQY----NSLDMICAKGRPPRFDSACNGDSGSGLVD 551
GG + + L S C + Y MICA G C GDSG V
Sbjct: 208 GGQPSEILQQAMLPVASHSACDRKNSYLVPVEEKSMICAGGMGM---GGCQGDSGGPFVC 264
Query: 550 GEGR---LVGVASWVENDAFECRNGNLVVFSRVSRARDWIREV 431
EG L G SW + C + VF+RVS DWI ++
Sbjct: 265 NEGGRWVLRGAVSWGQP---MCGTDHYTVFARVSSFIDWINDM 304
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 37.5 bits (83), Expect = 0.011
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -1
Query: 622 ICAKGRPPRFDSACNGDSGSGLV---DGEGRLVGVASWVENDAFECRNGNLVVFSRVSRA 452
+CA CNGDSG LV +G L G S+ + C VF+RV+
Sbjct: 249 LCAGEARSGASGGCNGDSGGPLVCEDNGRWYLHGAVSYGK---LHCPTTYYTVFARVASY 305
Query: 451 RDWIREVT 428
DWI++VT
Sbjct: 306 TDWIKQVT 313
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = -1
Query: 622 ICAKGRPPRFDSACNGDSGSGLV-DGEGRLV--GVASWVENDAFECRNGNLVVFSRVSRA 452
IC S+C GDSG LV + EGR V G S+ ++ C + V++RV+
Sbjct: 491 ICVGFNTENAASSCQGDSGGPLVCEEEGRWVLHGATSFGKS----CSPKHYSVYTRVNSY 546
Query: 451 RDWI 440
WI
Sbjct: 547 MKWI 550
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 37.1 bits (82), Expect = 0.015
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 1/97 (1%)
Frame = -1
Query: 712 VMRKDMHAMELSTQSDEVCS-KLEQYNSLDMICAKGRPPRFDSACNGDSGSGLVDGEGRL 536
+ R AM L S E C K +S +CA CNGDSG LV +
Sbjct: 904 ISRHPQQAM-LPIASHENCRRKYGDVSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGS 962
Query: 535 VGVASWVENDAFECRNGNLVVFSRVSRARDWIREVTE 425
+ V C + VF+RV+ DWI+ +T+
Sbjct: 963 WFLHGAVSYGMKYCPTTHYTVFARVASYTDWIKRMTD 999
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = -1
Query: 583 CNGDSGSGLVDGEGRLVGVASWVENDAFECRNGNLVVFSRVSRARDWI 440
CNGDSG LV + + + V A C VF+RVS WI
Sbjct: 674 CNGDSGGPLVCEQSGVWVLHGAVSYGARWCPTDYYTVFTRVSSYVAWI 721
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 36.7 bits (81), Expect = 0.019
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Frame = -1
Query: 715 GVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAK---GRPPRFDSA--CNGDSGSGLVD 551
G + +++H + E + ++S + K R R D+A CNGDSG LV
Sbjct: 234 GAIIRELHTFRRENRMGENNLRARDFSSFENKRRKFREKREARSDAAGGCNGDSGGPLVC 293
Query: 550 GEGRLVGVASWVENDAFECRNGNLVVFSRVSRARDWIREVTEI 422
+ + V C + VF+RV+ DWI+ +T +
Sbjct: 294 EDNGSWFLHGAVSYGLRNCPTTHYTVFARVASYTDWIKRMTVV 336
Score = 35.9 bits (79), Expect = 0.034
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Frame = -1
Query: 682 LSTQSDEVCS-KLEQYNSLDMICAKGRPPRFDSACNGDSGSGLVDGEGRLVGVASWVEND 506
L S E C K +S +CA CNGDSG LV + + V
Sbjct: 583 LPIASHENCRRKYGDVSSTAHLCAGEARSDAAGGCNGDSGGPLVCEDNGSWFLHGAVSYG 642
Query: 505 AFECRNGNLVVFSRVSRARDWIREVT 428
C + VF+RV+ DWI+ +T
Sbjct: 643 LRNCPTTHYTVFARVASYTDWIKRMT 668
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 36.3 bits (80), Expect = 0.026
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSL------DMICAKGRPPRFDSACNG 575
+G H G + + S + C K Q M+CA G P S C+G
Sbjct: 187 WGKIRHPGGSHHILQQAMMPPLSQDACKKKVQQAGFGIQITDSMVCA-GVPGSVVSGCHG 245
Query: 574 DSGSGLV----DGEGRLVGVASWVENDAFECRNGNL-VVFSRVSRARDWI 440
DSG V DG L G SW + C + + VF RV+ R+WI
Sbjct: 246 DSGGPYVCIQPDGRYVLQGDVSW---GSGRCDSSQMFTVFGRVAHFRNWI 292
>SB_59706| Best HMM Match : Trypsin (HMM E-Value=0.16)
Length = 91
Score = 35.9 bits (79), Expect = 0.034
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDSACNGDSGSGL 557
+G GG + +E+ S CS+ M+CA GR +C GDSG +
Sbjct: 2 WGRTAEGGSSPTVLMQVEVPIVSASTCSRAYSRLHESMVCA-GRASGGIDSCQGDSGGPM 60
Query: 556 V---DGEGRLVGVASW 518
V +G+ L GV SW
Sbjct: 61 VCEYNGKFNLEGVVSW 76
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 33.9 bits (74), Expect = 0.14
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 7/108 (6%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNS---LDMICAKGRPPRFDSACNGDSG 566
+G E G + + + E+C+++E YN + +CA G AC DSG
Sbjct: 179 WGKTEFEGTKPQVIREATVKLVPPEICNQVESYNGSIHVRALCA-GFDQGGVDACQFDSG 237
Query: 565 SGL---VDGEGRLVGVASWVENDAFEC-RNGNLVVFSRVSRARDWIRE 434
L + L GV SW EC R V++ + R W+R+
Sbjct: 238 GPLSCSIGSRFYLTGVVSW----GHECARPKKYGVYANMMRMTSWVRD 281
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 33.1 bits (72), Expect = 0.24
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Frame = -1
Query: 655 SKLEQYNSLDMICAKGRPPRFDSACNGDSGSGLVDGEGR---LVGVASWVENDAFECRNG 485
++L + + + MICA G+ R C GDSG V EG L G SW CR
Sbjct: 126 NQLMRVDPVSMICAGGQ--RAAGGCQGDSGGPFVCNEGGKWVLRGAVSWGHE---MCRTD 180
Query: 484 NLVVFSR 464
VF+R
Sbjct: 181 YYTVFAR 187
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLE----QYNSLDMICAKGRPPRFDSACNGDS 569
+G E+G + + + S E C ++ + + + M+CA S C+GDS
Sbjct: 417 WGMTEYGNAGARLLQQARIPVVSSEECERVNNKHRKVDKVTMLCAGNGGNSSISGCHGDS 476
Query: 568 GSGLV--DGEGRLV 533
G V G+GR V
Sbjct: 477 GGPFVCMGGDGRWV 490
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDSACNGDSGSGL 557
+GT GG + + S C+ D + G AC GDSG L
Sbjct: 81 WGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKIHDSMLCAGLDAGGIDACQGDSGGPL 140
Query: 556 V---DGEGRLVGVASWVENDAFECRNGNLV-VFSRVSRARDWIREV 431
V +G + G SW + C + N V++ V + W++ +
Sbjct: 141 VCEYNGRWHIEGATSW----GYGCASPNQYGVYAHVRYLKAWVQGI 182
>SB_8091| Best HMM Match : C1_4 (HMM E-Value=1.3)
Length = 308
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 476 DKVSVAALKSVIFHPRRHPHQPPLAVHEPAATITIASRVE 595
D + ++K V HP HP QPP V EP + A V+
Sbjct: 62 DYTTQVSIKDVT-HPEAHPVQPPPLVEEPLPLVNRARTVD 100
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/48 (31%), Positives = 20/48 (41%)
Frame = +2
Query: 446 VPRSGDPGEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAATITIASR 589
+ + +PGE K + L F PR P PP E A + SR
Sbjct: 707 IQKKSEPGEPVKPEIMCLSMPDFKPRERPSSPPKEDIEEGARDYVVSR 754
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Frame = -1
Query: 586 ACNGDSGSGLV----DGEGRLVGVASWVENDA 503
AC GDSGS +V DG VG++SW E A
Sbjct: 912 ACKGDSGSPIVVKRTDGSWSAVGLSSWGEGCA 943
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 4/106 (3%)
Frame = -1
Query: 736 YGTDEHGGVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDSACNGDSGSGL 557
+GT GG + + S C+ D + G AC GDSG L
Sbjct: 425 WGTLASGGNQPNKLMQASVPLVSQSKCNTAYPNKIHDSMLCAGLDAGGIDACQGDSGGPL 484
Query: 556 V---DGEGRLVGVASWVENDAFECRNGNLV-VFSRVSRARDWIREV 431
V G + G SW + C + N V++ V + W++ +
Sbjct: 485 VCEYKGRWHIEGATSW----GYGCASPNQYGVYAHVRYLKAWVQGI 526
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -1
Query: 634 SLDMICAKGRPPRFDSACNGDSGSGLVDGEGRLVGVASWV-ENDAFECRNGNLV 476
S + C G+ R C+GD+ E LV ASW E F C NG +
Sbjct: 2170 SSEFACESGQCVRKSFVCDGDNDCHDGSDESSLV-CASWTCEPGHFSCNNGRCI 2222
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 28.7 bits (61), Expect = 5.2
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
Frame = -1
Query: 697 MHAMELSTQSDEVCSKLEQYNSLD------MICAKGRPPRFDSACNGDSGSGLVDGEG-- 542
+H + S + C K YN L M CA D AC GDSG LV EG
Sbjct: 252 LHQAAVPLVSRDTCQKA--YNDLHYKVSSRMRCAGYGAGGID-ACQGDSGGPLVCKEGDV 308
Query: 541 -RLVGVASWVENDAFECRNGNLVVFSRVSRARDWIR 437
L+G SW A R G V++ + + W++
Sbjct: 309 WYLMGAISWGVGCA---RGGRYGVYADMMDLKYWVQ 341
>SB_13844| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 73
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 652 KLEQYNSLDMICAKGRPPRFDSACNGDSGSGLVDGEG 542
K + N+ +CA CNGDSG LV EG
Sbjct: 13 KYSKVNAKAHLCACSGQAASSGGCNGDSGGALVCEEG 49
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,346,318
Number of Sequences: 59808
Number of extensions: 348216
Number of successful extensions: 930
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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