Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07r
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical...    28   7.9  

>AF016677-7|AAB66144.1|  292|Caenorhabditis elegans Hypothetical
           protein ZK1240.8 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
 Frame = -1

Query: 715 GVMRKDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDS-ACNGDSGSGLVDGEGR 539
           G+M+  M  ME S+ +     K  +YN  + +C++   P  D   C      G+  G  +
Sbjct: 70  GLMQA-MEMMEASSSNSPPKCKEHRYNIAEFLCSEHDCPSIDKLMCRTCEEFGVHTGHTK 128

Query: 538 -LVGVASWVENDAFECR 491
            L+ V +    D  ECR
Sbjct: 129 VLMSVEAGKIRDVLECR 145


>AC024817-16|AAF59585.2|  610|Caenorhabditis elegans Hypothetical
           protein Y54G2A.13 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 670 SDEVCSKLEQYNSLDMICAKGRPPRFDSA 584
           SDEVC K  +    D++C  G P +  SA
Sbjct: 63  SDEVCKKDFENGQEDVLCGAGTPKKTSSA 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,354
Number of Sequences: 27780
Number of extensions: 264840
Number of successful extensions: 672
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)