Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07r
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.1  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +2

Query: 506 VIFHPRRHPHQPPLAVHEPAATITIASRVEPW-GATFSADHIQRVVLL*FRTYFVGL 673
           V FH +RH     + V+ P   + + S V  W     +AD +   +       F+GL
Sbjct: 205 VYFHLQRHMGNFLIQVYGPCVLLVVLSWVSFWLNREATADRVSLGITTVLTMTFLGL 261


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 215 DIYFRTCFRFLNSNIKFS 162
           D++    FR+L++ +KFS
Sbjct: 61  DVHMMLQFRYLDARLKFS 78


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 541 RLVGVASWVENDAFECRNGN 482
           R++G  SWV  ++  C N +
Sbjct: 348 RIIGRRSWVTRESQICNNSS 367


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 281 PTQFCFDISNITKATS 328
           P++FC  ++ +T ATS
Sbjct: 702 PSKFCLSVTLLTVATS 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,331
Number of Sequences: 438
Number of extensions: 3554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)