Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07r
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05120.1 68415.m00539 expressed protein                             30   1.4  
At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM ...    29   3.2  
At5g48380.1 68418.m05978 leucine-rich repeat family protein / pr...    28   5.6  
At3g05430.1 68416.m00595 PWWP domain-containing protein contains...    28   5.6  
At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / B...    28   7.4  
At1g27210.1 68414.m03314 expressed protein                             27   9.8  

>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -1

Query: 580 NGDSGSGLVDGEGRLVGVASW 518
           N +SGSGL DG+  LV V SW
Sbjct: 147 NEESGSGLQDGKSWLVNVVSW 167


>At1g64290.1 68414.m07285 F-box protein-related contains TIGRFAM
           TIGR01640 : F-box protein interaction domain;
          Length = 364

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 649 LEQYNSLDMICAKGRPPRFDSACNGDSGSGLVDGEGRLVGVASWVEND 506
           + + N++   C K     F    N D  SGLV  EG+L  +  W   D
Sbjct: 221 ISRNNNVIRFCLKTETWSFFHTPNSDVFSGLVRYEGKLGAIRQWTNKD 268


>At5g48380.1 68418.m05978 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 620

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 650 IRAIQLSGYDLR*RSPPTVRLC 585
           + +I+LSGY LR   PP V+LC
Sbjct: 78  VLSIKLSGYGLRGVFPPAVKLC 99


>At3g05430.1 68416.m00595 PWWP domain-containing protein contains
           Pfam profile:PF00855 PWWP domain
          Length = 965

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 434 LSDPVPRSGDP--GEDDKVSVAALKSVIFHPRRHPHQPPLAVHEPAAT 571
           LS+ +  S DP  G  D+ S   ++   FH R H +Q  LA   P+AT
Sbjct: 598 LSNLLALSLDPLFGSSDRSSFRVIRQFFFHFRSHVYQKSLAT-SPSAT 644


>At5g44750.1 68418.m05485 UMUC-like DNA repair family protein / BRCT
           domain-containing protein low similarity to Rev1S [Homo
           sapiens] GI:12483635; contains Pfam profiles PF00817:
           ImpB/MucB/SamB family, PF00533: BRCA1 C Terminus (BRCT)
           domain
          Length = 1102

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 718 GGVMR-KDMHAMELSTQSDEVCSKLEQYNSLDMICAKGRPPRFDSACNGDSGSGLVD 551
           GGV R ++ ++ E S QS +  S L     LDM   +  PP   S  +G  G  L +
Sbjct: 776 GGVSRLRESNSEESSIQSGDTNSSLPPMCYLDMEVLENLPPELLSELDGTYGGKLFE 832


>At1g27210.1 68414.m03314 expressed protein
          Length = 625

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 634 SLDMICAKGRPPRFDSACNGDSGSGL 557
           S D+  + GR PR  S C GDS S L
Sbjct: 524 SCDLAVSNGRVPRNSSGCAGDSCSKL 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,425,193
Number of Sequences: 28952
Number of extensions: 236183
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)