Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07f
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       28   1.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   6.4  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    25   6.4  

>SPAC23C4.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 104

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 238 FRANNGTSTGTTEKNGMWKP--FVYCFHIRLCLC 143
           + +++ T+    E+   W+   F+ C HIR C+C
Sbjct: 29  YDSDSPTTVHHDERKESWRSHGFIVCLHIRCCIC 62


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 92  NDIPDLKQKSALVTTEITKTQSDVK 166
           + + D K  +A++++E+TK+  DVK
Sbjct: 738 SSLSDAKNTNAILSSELTKSSEDVK 762


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -3

Query: 295 GQYVMTVREQCAVSRSEDPFRANNGTSTGTTEKNGMWKPFVYCFHIRL--CLC 143
           G +   VR  C++S       + +GT +   + NG W P  Y  H     C+C
Sbjct: 11  GGHKQDVRGVCSISNELIGSASRDGTYSVWEQINGEWTPHFYENHEGFVNCVC 63


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 284 YVLAGTNKSDDQSGIIRYVKRMVIHPLFSVGPY---WLDVEDFNLKQVAARWD 433
           ++  G   SD        V R ++ PLFS+G +   W  V + ++  V A++D
Sbjct: 347 FIFLGPKASDVYESYSALVGRPLLPPLFSIGYHQCRWNYVSEEDVLNVDAKFD 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,651
Number of Sequences: 5004
Number of extensions: 50663
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)