Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07f
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0580 - 7539208-7539328,7539409-7539579,7539658-7540024,754...    30   1.2  
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416           29   2.2  
01_06_0997 + 33676441-33676758,33678223-33678314,33678443-336785...    29   3.8  
05_07_0081 - 27572047-27572925,27573285-27573419                       28   6.6  
04_04_0204 + 23582239-23582338,23582866-23583213,23583357-235834...    28   6.6  
03_05_0896 - 28592658-28593331,28594069-28595455                       28   6.6  

>04_01_0580 -
           7539208-7539328,7539409-7539579,7539658-7540024,
           7540093-7540516
          Length = 360

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 146 KTQSDVKAVHERFPHAVLFGGTCGGSIISPKWI-LTAGH 259
           +T++D KA+HE  P     GG    S+++PK + L  GH
Sbjct: 125 RTEADSKAIHEPPPMKKRRGGKVNASLLAPKKLDLDKGH 163


>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
          Length = 1030

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 128 VTTEITKTQSDVKAVHERFPHAVL--FGGTCGGSIISPKWILTAGHCTLFTNGHYVLAG 298
           +TT      SD+  + E     VL  +GG+  G ++S  WI +  H T    G+Y  +G
Sbjct: 346 LTTVEASMNSDILLIRELHWLEVLRLYGGSGQGKLVSFSWIGSLKHLTYLELGNYNFSG 404


>01_06_0997 +
           33676441-33676758,33678223-33678314,33678443-33678540,
           33678824-33678979,33679106-33679731,33679826-33679896,
           33679987-33680241,33680337-33680454,33680595-33680766,
           33680854-33681395
          Length = 815

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +2

Query: 116 KSALVTTEITKTQSDVKAVHERFPHAVLFGGTCGGSIISP 235
           KSA+VTT  TK + D   + E  P  V      GG  I+P
Sbjct: 629 KSAIVTTASTKDEYDTPILAEALPRKVADPFDYGGGNINP 668


>05_07_0081 - 27572047-27572925,27573285-27573419
          Length = 337

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 128 PAQIFVLNPVCHWRRVEVARTHLPPARSPREPTVCW 21
           P+ +F  + +  +RRV  +  +LPP  +   P+ CW
Sbjct: 224 PSFLFAASLLPTYRRVSSSGFYLPPPPNNHHPSPCW 259


>04_04_0204 +
           23582239-23582338,23582866-23583213,23583357-23583472,
           23583565-23584003,23584165-23584203,23584282-23584569,
           23584667-23584806,23585080-23585563,23585828-23586090
          Length = 738

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 128 PAQIFVLNPVCHWRRVEVARTHLPPARSPREPTVCWRTSCH 6
           PAQ   ++P+      +VA   LPPAR+ + P++  R   H
Sbjct: 681 PAQPPAMSPMPLLTGSDVAEPPLPPARTAQAPSLASRMQAH 721


>03_05_0896 - 28592658-28593331,28594069-28595455
          Length = 686

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +2

Query: 89  ANDIPDLKQKSALVTTEITKTQSDVKAVHERFPHAVLFG-GTCGGSI 226
           + +IPDLKQ          +    + A     P +   G G CGG +
Sbjct: 182 SGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPL 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,857,381
Number of Sequences: 37544
Number of extensions: 379509
Number of successful extensions: 948
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)