Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c07f
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 4e-06
SB_56478| Best HMM Match : Trypsin (HMM E-Value=0) 43 2e-04
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0) 43 2e-04
SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_51536| Best HMM Match : Trypsin (HMM E-Value=0) 41 7e-04
SB_25649| Best HMM Match : Trypsin (HMM E-Value=0) 41 9e-04
SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23) 40 0.001
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08) 39 0.003
SB_30267| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.005
SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0) 38 0.006
SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22) 38 0.006
SB_10167| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.006
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 38 0.008
SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012) 38 0.008
SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 37 0.011
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.011
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 37 0.011
SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44) 37 0.014
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08) 37 0.014
SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 36 0.033
SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2) 36 0.033
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 36 0.033
SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.044
SB_33589| Best HMM Match : Trypsin (HMM E-Value=0) 35 0.058
SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12) 34 0.076
SB_10327| Best HMM Match : Trypsin (HMM E-Value=0) 34 0.076
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.076
SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0) 33 0.13
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.13
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0) 33 0.18
SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21) 32 0.31
SB_55505| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.41
SB_28897| Best HMM Match : Trypsin (HMM E-Value=0) 32 0.41
SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43) 31 0.54
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 31 0.54
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08) 31 0.94
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.2
SB_9601| Best HMM Match : Trypsin (HMM E-Value=0) 30 1.6
SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027) 29 3.8
SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32) 27 8.8
>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 52.4 bits (120), Expect = 3e-07
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Frame = +2
Query: 188 HAVLFGGTCGGSIISPKWILTAGHCTLFTN--GHYVLAGTNKSDDQSGI--IRYVKRMVI 355
H G CGGS+I+P+W+LTAGHC L + + V+ G D G I +V+R++
Sbjct: 80 HVTPHGFVCGGSLIAPQWVLTAGHCILTEDPEKYRVVLGDVDRDTTEGSEQIFHVRRIIK 139
Query: 356 HPLFSVG-PYWLDVEDFNLKQVA 421
HP +S PY DV L + A
Sbjct: 140 HPHYSRDVPYDNDVALLQLSRPA 162
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 4/52 (7%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCT---LFTNGHYVLAGT-NKSDDQSGIIRYVKRMVI 355
CGG++ISP W+LTAGHC L +G+ V+ GT N+S + I+ Y +R ++
Sbjct: 461 CGGTLISPDWVLTAGHCVHGQLDPSGYTVVVGTLNQSALSAPILEYQERSIL 512
Score = 33.9 bits (74), Expect = 0.10
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG++IS +W++TA HC
Sbjct: 872 CGGALISDRWVVTASHC 888
>SB_56478| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 968
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC---TLFTNGHYVLAGTNKSDDQSGI--IRYVKRMVIHPLFS 370
CGGS++SP W++TA HC + T + V+ G + + G VKR++ HP ++
Sbjct: 93 CGGSLVSPTWVVTAAHCIAGSSHTPSYKVVTGEHIRNSPEGTEQTHDVKRIITHPTYN 150
Score = 36.3 bits (80), Expect = 0.019
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P+W+LTA HC
Sbjct: 690 CGGSLIHPQWVLTATHC 706
>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1031
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCT--LFTNGHYVLAGTNKSDDQSGIIR--YVKRMVIHP 361
CGG+++ P+W++TA HC L T YV G + D ++G + ++R+ +HP
Sbjct: 275 CGGTLVHPRWVVTASHCVHKLTTGDLYVRMGAHWKDGKTGSEQDFRIQRIFMHP 328
>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 696
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Frame = +2
Query: 209 TCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSD--DQSGIIRYVKRMVIHPLFSVGPY 382
TCG ++I P W +TA HC + + + V+ G++ D + S V+R+ H FS+ Y
Sbjct: 352 TCGATLIRPGWAITAAHCVMRPDKYTVIVGSHSRDASEPSAQNIKVRRVYRHRGFSMANY 411
Query: 383 WLDVEDFNLKQVA 421
D+ L++ A
Sbjct: 412 VDDIALLELERSA 424
Score = 34.3 bits (75), Expect = 0.076
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +2
Query: 209 TCGGSIISPKWILTAGHC 262
+CGG++IS +W++TA HC
Sbjct: 55 SCGGTLISDRWVVTASHC 72
>SB_36638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 41.5 bits (93), Expect = 5e-04
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTNGH 283
CGGS+IS KW+LTA HC NG+
Sbjct: 133 CGGSLISEKWVLTAAHCVTHRNGN 156
>SB_51536| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 347
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTNG--HYVLA-GTNKSDDQSGIIRY--VKRMVIHPLFS 370
CGGS+++P+WI+TA HC ++ Y +A G + + G + V+R+++HP ++
Sbjct: 135 CGGSVVAPEWIVTAAHCFAYSKDAKDYTIAVGEHDLNATDGYEQRPDVERIILHPKYA 192
>SB_25649| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 718
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Frame = +2
Query: 203 GGTCGGSIISPKWILTAGHCTLFTN----GHYVLA-GTNKSDDQSGIIRYV--KRMVIHP 361
G CGGSII P W++TAGHC + + G VL + S G +Y R+ +HP
Sbjct: 7 GHWCGGSIIDPHWVVTAGHCVVPWSPRAIGTRVLRFAEHDSSRMEGYEQYAIPDRIHLHP 66
Query: 362 LFSVG 376
F +G
Sbjct: 67 GFVIG 71
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P WILT+ HC
Sbjct: 275 CGGSLIDPYWILTSSHC 291
Score = 34.3 bits (75), Expect = 0.076
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I +W++T+GHC
Sbjct: 561 CGGSLIDKQWVVTSGHC 577
>SB_21521| Best HMM Match : Trypsin (HMM E-Value=1.7e-23)
Length = 299
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTNG---HYVLAGTNK 307
CGGS++SP W+LTA HC + +N + V+ G +K
Sbjct: 56 CGGSLLSPLWLLTAAHCVIRSNNSADYTVIVGAHK 90
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +2
Query: 209 TCGGSIISPKWILTAGHC---TLFTNGHYVLAGTNKSDDQSGIIRYVK--RMVIHPLFS 370
TCGGS+IS +W++TA HC G+ V+ G +K + + + ++ +++ HP ++
Sbjct: 131 TCGGSLISDRWVVTAAHCIHRNKNPGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKYN 189
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 209 TCGGSIISPKWILTA 253
TCGGS+IS +W++TA
Sbjct: 454 TCGGSLISDRWVVTA 468
>SB_11235| Best HMM Match : Trypsin (HMM E-Value=1.1e-08)
Length = 235
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTN--GHYVL-AGTNK--SDDQSGIIRYVKRMVIHPLFSVG 376
CG S++SP W LTA HC ++ Y L AG ++ +D + ++R V +++ H FS+G
Sbjct: 111 CGASLLSPGWALTAAHCVQRSSNPADYTLAAGAHRRVNDAHAQVLR-VSQVISHKEFSMG 169
Query: 377 PYWLDV 394
DV
Sbjct: 170 HLRNDV 175
>SB_30267| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 282
Score = 38.3 bits (85), Expect = 0.005
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 203 GGTCGGSIISPKWILTAGHCTL 268
G CGGS+++P W+LTA HC L
Sbjct: 55 GFICGGSLVAPGWVLTAAHCIL 76
>SB_46573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTNGHYVLAGTN-KSDDQSGIIRYVKRMVIHP 361
CGGS+I P W+LTA HC + L G + +S+ G + +K I P
Sbjct: 57 CGGSLIDPGWVLTAAHCLVGEQPDSALLGAHYRSNKTVGTEKDIKVAQIIP 107
>SB_45862| Best HMM Match : GMP_synt_C (HMM E-Value=0)
Length = 687
Score = 37.9 bits (84), Expect = 0.006
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 209 TCGGSIISPKWILTAGHCTL---FTNGHYVLAG 298
+CGG++IS KW++TA HC + F + V+AG
Sbjct: 501 SCGGALISSKWVITAAHCVIEYPFPQVYEVIAG 533
>SB_26443| Best HMM Match : Trypsin (HMM E-Value=3e-22)
Length = 231
Score = 37.9 bits (84), Expect = 0.006
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I+P+W+LTA HC
Sbjct: 63 CGGSLITPEWVLTAAHC 79
>SB_10167| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 532
Score = 37.9 bits (84), Expect = 0.006
Identities = 12/17 (70%), Positives = 16/17 (94%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I+P+W+LTA HC
Sbjct: 106 CGGSLITPEWVLTAAHC 122
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +2
Query: 203 GGTCGGSIISPKWILTAGHCTLFT------NGHYVLAGTNKSDDQSGIIR--YVKRMVIH 358
G CGG+++SP+W++TA HC N + G +K G + V R+++H
Sbjct: 374 GHHCGGTLVSPQWVVTAAHCVDHVKDPKNYNELAITLGEHKRSASEGTEQRFSVARIIVH 433
Query: 359 PLF 367
P +
Sbjct: 434 PQY 436
>SB_33775| Best HMM Match : Trypsin (HMM E-Value=0.012)
Length = 115
Score = 37.5 bits (83), Expect = 0.008
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I+P+WILTA HC
Sbjct: 37 CGGSLIAPQWILTATHC 53
>SB_38546| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 506
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P+W+LTA HC
Sbjct: 286 CGGSLIHPEWVLTAAHC 302
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 37.1 bits (82), Expect = 0.011
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTL---FTNGHYVLAGTNK 307
CGGS++S W+LTA HC + T+ + V+ G +K
Sbjct: 340 CGGSLLSSTWVLTAAHCVIRSHNTSDYTVIVGAHK 374
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 37.1 bits (82), Expect = 0.011
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P+W+LTA HC
Sbjct: 246 CGGSLIHPEWVLTAAHC 262
>SB_48048| Best HMM Match : Trypsin (HMM E-Value=3.64338e-44)
Length = 348
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 179 RFPHAVLFGGTCGGSIISPKWILTAGHCTLFTN 277
RF H+ CGG++I+ +W+LTA HC TN
Sbjct: 146 RFDHSGNQMQICGGALINREWVLTAAHCFYKTN 178
>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 36.7 bits (81), Expect = 0.014
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG++ISP W+LTA HC
Sbjct: 574 CGGNVISPWWVLTAAHC 590
>SB_10942| Best HMM Match : PDZ (HMM E-Value=2.3e-08)
Length = 386
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P+WILTA HC
Sbjct: 80 CGGSLIHPQWILTATHC 96
>SB_4778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 36.7 bits (81), Expect = 0.014
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTN 277
CGG++++P+W++TA HC + N
Sbjct: 657 CGGTLVTPEWVITAAHCVVDKN 678
>SB_31643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 35.9 bits (79), Expect = 0.025
Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Frame = +2
Query: 200 FGGT-CGGSIISPKWILTAGHC 262
+GG CGG+++ P+W++TA HC
Sbjct: 161 YGGQFCGGTLVHPQWVITAAHC 182
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I P WILT+ HC
Sbjct: 15 CGGSLIDPYWILTSSHC 31
Score = 34.3 bits (75), Expect = 0.076
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I +W++T+GHC
Sbjct: 276 CGGSLIDKQWVVTSGHC 292
>SB_17890| Best HMM Match : Trypsin (HMM E-Value=3.2)
Length = 157
Score = 35.5 bits (78), Expect = 0.033
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC------TLFTNGHYVLAGTNK---SDDQSGIIRYVKRMVIHPL 364
C GS+I +WI+TAGHC + + VL G + S + VKR+++HP
Sbjct: 79 CAGSLIEARWIITAGHCFKDPRSSADPDKWKVLLGERRRHSSKRHFERAQQVKRIIVHPK 138
Query: 365 FS 370
F+
Sbjct: 139 FN 140
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 203 GGTCGGSIISPKWILTAGHC 262
G CGGSI++ +WI+TA HC
Sbjct: 1806 GHICGGSIVNSQWIVTAAHC 1825
>SB_42973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1864
Score = 35.1 bits (77), Expect = 0.044
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC-TLFTNGHYVLAGTNKSD----DQSGIIRYVKRMVIHPLFSVG 376
CGG++I+ W+LTA HC F+ SD D G +K + +HP ++
Sbjct: 1266 CGGALIAADWVLTAAHCFDRFSMPPEWTVQVGVSDMRRRDGKGQSLSIKAIFVHPQYNSS 1325
Query: 377 PYWLDVEDFNLKQVA 421
+ D+ L+Q A
Sbjct: 1326 SHEHDLAVLQLQQPA 1340
>SB_37295| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTNG---HYVLAGTNKS--DDQSGIIRYVKRMVIHPLFS 370
CGGS++S W++TA HC ++ + ++ G + ++ + VK+++ HP ++
Sbjct: 502 CGGSLVSSTWVVTAAHCVARSSNPAQYQIIVGEHNRNVNEVTEETLNVKKVIAHPQYN 559
>SB_33589| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 289
Score = 34.7 bits (76), Expect = 0.058
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Frame = +2
Query: 191 AVLFGGT--CGGSIISPKWILTAGHC 262
A+L GT CGGS+++ W++TA HC
Sbjct: 70 ALLMNGTQFCGGSLVNENWVVTARHC 95
>SB_20791| Best HMM Match : Trypsin (HMM E-Value=4.8e-12)
Length = 227
Score = 34.3 bits (75), Expect = 0.076
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I +W+LTA HC
Sbjct: 68 CGGSLIDSEWVLTAAHC 84
>SB_10327| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 865
Score = 34.3 bits (75), Expect = 0.076
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLFTN--GHYVLAGTNKSDDQSGIIRYVKRMVIHPLFSV 373
CG S+++P W LTA HC ++ Y L + G + + ++ H FS+
Sbjct: 266 CGASLLTPGWALTAAHCLTLSDDASDYTLVAGAHQRENDGQVFGISKIRKHKGFSM 321
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 34.3 bits (75), Expect = 0.076
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHCTLF 271
CGG++I+ W+LTA HC ++
Sbjct: 1192 CGGTLIAEDWVLTAAHCVVY 1211
>SB_29414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 33.9 bits (74), Expect = 0.10
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = +2
Query: 191 AVLFGGT---CGGSIISPKWILTAGHC 262
A+ GT CGGS+I +W++TA HC
Sbjct: 43 ALFLNGTHHRCGGSVIKSQWVVTAAHC 69
>SB_40955| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 383
Score = 33.5 bits (73), Expect = 0.13
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 176 ERFP-HAVLFGGT-CGGSIISPKWILTAGHCTLFTNGHY 286
ER+P H V+ T C G+++SP+ +LTA HC L T Y
Sbjct: 154 ERYPFHTVVKLSTGCTGTLVSPRHVLTAAHC-LHTGRDY 191
>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
Length = 1019
Score = 33.5 bits (73), Expect = 0.13
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I W+LTA HC
Sbjct: 417 CGGSLIHSNWVLTAAHC 433
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC---TLFTNGHYVLAGTNKSDDQSGIIRY-VKRMVIHPLFSV-G 376
CGG++I +W++TA HC + + + + G + + G + V + +H F G
Sbjct: 314 CGGTLIDTEWVVTAAHCVFQNIEPSNYKIKLGAHDRESSEGALTIPVTAIHMHTRFMTDG 373
Query: 377 PYWLDVEDFNLKQVA 421
Y D+ L A
Sbjct: 374 SYGYDIAIMKLANPA 388
>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 1007
Score = 33.1 bits (72), Expect = 0.18
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I+ +W++TA HC
Sbjct: 460 CGGSLINREWVVTAAHC 476
>SB_59555| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 898
Score = 32.7 bits (71), Expect = 0.23
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS+I+ W++TA HC
Sbjct: 57 CGGSLIAKDWVVTAAHC 73
>SB_44747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 307
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 182 FP-HAVLFGGTCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSDD 316
FP HA + C G+++SP+W++TA C ++ ++ K+DD
Sbjct: 41 FPWHAYIPELQCSGALVSPRWVVTAASCLKQSSSPFI--SRVKTDD 84
>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2644
Score = 32.7 bits (71), Expect = 0.23
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 TEITKTQSDVKAVHERFPHAVLF-GGTCGGSIISPKWILTAGHCTLFTNGHYVLAG 298
TE+ Q + +++ + A F C G ++ PK +LTA HC H + G
Sbjct: 97 TELKGAQRESRSIRRKLRRAQRFCPWGCTGVLVGPKHVLTAAHCVANEKPHNLKVG 152
>SB_48467| Best HMM Match : F5_F8_type_C (HMM E-Value=1.4e-21)
Length = 418
Score = 32.3 bits (70), Expect = 0.31
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 200 FGGTCGGSIISPKWILTAGHC 262
+G CGG++++ +W+LTA C
Sbjct: 280 YGPVCGGTLLTSEWVLTAARC 300
>SB_55505| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 292
Score = 31.9 bits (69), Expect = 0.41
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGGS++ WI+TA HC
Sbjct: 66 CGGSLVPEDWIVTAAHC 82
>SB_28897| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 974
Score = 31.9 bits (69), Expect = 0.41
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC-----TLFTNGHYVLAGTNKSDDQSGIIRYVK--RMVIHPLFS 370
CGG++I+ W++TA HC + + V G + + G + V+ +V+HPL +
Sbjct: 749 CGGALIARDWVVTAAHCFYYDGKIVPSDILVRLGEHDRTLEEGSEQNVRASNLVLHPLAN 808
Query: 371 VGPYWLDVEDFNLK 412
DV LK
Sbjct: 809 KNGLDFDVALIQLK 822
>SB_35844| Best HMM Match : Trypsin (HMM E-Value=1.90577e-43)
Length = 249
Score = 31.5 bits (68), Expect = 0.54
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG++I +W++TA HC
Sbjct: 73 CGGALIDREWVVTAAHC 89
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 178 FVYCFHIRLCLCNFSCYQRRFLF*IRYVIGAGLR*RARTCRQ 53
FV C R C CN +C R LF + Y I + CRQ
Sbjct: 106 FVLCTCHRACSCNVACCVRAMLFFVLYCIVLATCCLSNACRQ 147
>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
Length = 153
Score = 30.7 bits (66), Expect = 0.94
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG+++ P++++TA HC
Sbjct: 50 CGGTLVHPRFVVTASHC 66
>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 454
Score = 30.3 bits (65), Expect = 1.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG+++ W++TA HC
Sbjct: 240 CGGALVHEDWVVTASHC 256
>SB_9601| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 285
Score = 29.9 bits (64), Expect = 1.6
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +2
Query: 212 CGGSIISPKWILTAGHC 262
CGG+++ +W++T HC
Sbjct: 54 CGGALVHERWVVTGAHC 70
>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3066
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 593 RAYLYASRPHARQFRSQHIRRRLRLV 516
R Y+ R ARQ+R QHI++ LR V
Sbjct: 2977 RVYINTGRALARQYRYQHIQQLLRCV 3002
>SB_17196| Best HMM Match : Trypsin (HMM E-Value=0.027)
Length = 379
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 143 TKTQSDVKAVHER-FPHAVLFGGTCGGSIISPKWILTAGHCTLFTNGHYVLA 295
T+ + ++AV F V C G++IS + +LT+ HC + + Y+++
Sbjct: 155 TRLEIPIRAVRRTPFSSIVHISTGCTGTLISTRHVLTSAHC-VHDSSEYIIS 205
>SB_27293| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 372
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 HTGFKTKICAGNN*NYKDTV*CESSTRKVSTCRS-FRWYLWRFH 225
+ G+K+ +CAG N N T C + C++ RW W H
Sbjct: 282 NVGWKSMLCAGYNDNKTQTSGCIGDSGGPLMCKAGDRWSKWVLH 325
>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
Length = 648
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 185 ETFRVLLSHQTVSL*FQLLPAQIFVLNPVCHWRRVEVARTHLPPARSPRE 36
+T+R L Q +S + LP + V P R+ + TH+ R PR+
Sbjct: 511 QTYRQNLLQQPISRSLECLPLRPVVDQPFLRNHRLTASGTHINGGRIPRD 560
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,116,762
Number of Sequences: 59808
Number of extensions: 427493
Number of successful extensions: 1175
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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