Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07f
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    38   0.007
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    30   1.5  
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in...    29   1.9  
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in...    29   1.9  
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in...    29   1.9  
U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like pr...    29   1.9  
AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like ...    29   1.9  
AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like...    29   2.5  
Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    29   3.3  
U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like pr...    28   4.4  
U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +2

Query: 212 CGGSIISPKWILTAGHC---TLFTNGHYVLAGTNKSDDQSGIIRYVKRMVIHPLFSVG 376
           CGGS+I P ++LTA HC         + V  G ++S   SG    V  + IHP +++G
Sbjct: 84  CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSG--SGSPHRVTAVSIHPWYNIG 139


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 167 AVHERFPHAVLFGGTCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSD 313
           +V  RFP        CGG +I+P  ++T+ HC    +   V A     D
Sbjct: 33  SVITRFPDGTT--NVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGD 79


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 203 GGTCGGSIISPKWILTAGHCTL 268
           G  CG ++I   W++TA HC L
Sbjct: 63  GILCGATVIDDFWLVTAAHCAL 84


>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform d protein.
          Length = 2350

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 92   NDIPDLKQKSALVTTEITKTQSDVKAVHER 181
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1123 NDITELKRKHA---AEIDKLKSDISALHDK 1149


>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform b protein.
          Length = 2117

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 92   NDIPDLKQKSALVTTEITKTQSDVKAVHER 181
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222


>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
            interacting proteinprotein 1, isoform a protein.
          Length = 2396

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 92   NDIPDLKQKSALVTTEITKTQSDVKAVHER 181
            NDI +LK+K A    EI K +SD+ A+H++
Sbjct: 1196 NDITELKRKHA---AEIDKLKSDISALHDK 1222


>U41528-3|AAK39170.2|  594|Caenorhabditis elegans Kinesin-like
           protein protein 8 protein.
          Length = 594

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 80  QPGANDIPDLKQKSALVTTEITKTQS 157
           +PG+ DI DLKQK A++T E    +S
Sbjct: 55  KPGSTDINDLKQKIAVLTKEFQGKES 80


>AF003134-1|AAB54144.1|  522|Caenorhabditis elegans Trypsin-like
           protease protein 7 protein.
          Length = 522

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 209 TCGGSIISPKWILTAGHC 262
           TC G+I+SP+ IL A HC
Sbjct: 192 TCTGTIVSPRHILIATHC 209


>AF003384-12|AAB54236.2|  331|Caenorhabditis elegans Trypsin-like
           protease protein 5 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +2

Query: 212 CGGSIISPKWILTAGHC 262
           CGG++I+ K +LTA HC
Sbjct: 62  CGGTLITLKHVLTAAHC 78


>Z92832-5|CAB07374.2|  292|Caenorhabditis elegans Hypothetical
           protein F31D4.6 protein.
          Length = 292

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +2

Query: 176 ERFPHAVLFG----GTCGGSIISPKWILTAGHCTLFTNGH--YVLAGTNKSDDQSGIIRY 337
           + FP AV F        GGSIISP  I+TA H  + T G    +    N     S I R 
Sbjct: 26  KNFPWAVSFTVDGVNRLGGSIISPYHIITAAHGFITTIGSRGNLCENKNWKKPNSSIYRS 85

Query: 338 VK 343
           +K
Sbjct: 86  IK 87


>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +2

Query: 212 CGGSIISPKWILTAGHC---TLFTNGHYVLAG--TNKSDDQSGIIRYVKRMVIHPLF 367
           CG SI+    ++TA HC       + + V+ G   N   D +  I Y++R+  +PL+
Sbjct: 54  CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY 110


>U97408-1|AAB93344.2|  360|Caenorhabditis elegans Trypsin-like
           protease protein 6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 212 CGGSIISPKWILTAGHC 262
           C G++ SP+ ILTA HC
Sbjct: 75  CSGTLTSPRHILTATHC 91


>U28735-5|AAF99955.3|  279|Caenorhabditis elegans Hypothetical
           protein F48E3.4 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 209 TCGGSIISPKWILTAGHCTLFTNGHYVLAGTNKSDDQS 322
           TC G+++SP  +LT+  C   T  + +     K  D S
Sbjct: 46  TCTGTLLSPSVVLTSSKCFPDTRKNLIAQAIIKKKDSS 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,508,873
Number of Sequences: 27780
Number of extensions: 303227
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)