Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c07f
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    40   2e-05
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   1.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.0  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.2  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.2  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 39.9 bits (89), Expect = 2e-05
 Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
 Frame = +2

Query: 203 GGTCGGSIISPKWILTAGHCTLFTNGH--YVLAG----TNKSDDQSGIIRYVKRMVIHPL 364
           G  CG +IIS +++LTA HC +  N     ++ G    ++K++  + ++  + +++IHP 
Sbjct: 185 GMICGATIISKRYVLTAAHCIIDENTTKLAIVVGEHDWSSKTETNATVLHSINKVIIHPK 244

Query: 365 FSVGPYWLDVEDFNLKQVA 421
           + +    ++ +D+ +  +A
Sbjct: 245 YDI----IEKDDWQINDIA 259


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 194 VLFGGTCGGSIISPKWILTA-GHCTLFTNGHYVL 292
           VL G TC GS I   W+  A     +F+ G ++L
Sbjct: 575 VLAGATCLGSSIKAMWLRRALASLMVFSLGLFLL 608


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 234 RNGSSLRDTAHCS 272
           +NGS + DTA CS
Sbjct: 200 KNGSVILDTARCS 212


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 51  RWRQVRARYLNPAPMTYRI*NKNLRW 128
           +W QV A +LN +P   ++ N  + W
Sbjct: 653 KWLQVLALWLNHSPNYDQVTNWYMGW 678


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 109 KTKICAGNN*NYKD 150
           +TKI + NN NYK+
Sbjct: 300 ETKIISSNNYNYKN 313


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +1

Query: 109 KTKICAGNN*NYKD 150
           +TKI + NN NYK+
Sbjct: 311 ETKIISSNNYNYKN 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,763
Number of Sequences: 438
Number of extensions: 4093
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)