Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c06r
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)                   25   1.9  
SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         29   5.6  
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)                   29   5.6  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +2

Query: 542 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 721
           C+   CS++  C  SC   GC L+    +         +    C+SR  G  CT S  G 
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281

Query: 722 G*KCP 736
             KCP
Sbjct: 282 DVKCP 286


>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
          Length = 290

 Score = 25.4 bits (53), Expect(2) = 1.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 608 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 525
           +++L++  +++   YC+     NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 527 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 375
           +R YF     L+M+G    ++  + +L L        S  R+  G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233


>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = -2

Query: 443  LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMS---- 276
            L+ GST   S++ IA       +T L S  F       R Y   H T Y  YL +S    
Sbjct: 868  LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920

Query: 275  -TTTCNCNSRDRVV 237
             T  C  NSRDRV+
Sbjct: 921  CTQACRLNSRDRVL 934


>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
          Length = 1514

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = -3

Query: 769  SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNM-RAKARAPXXXXXXXXXX 593
            +PP+R S    R+     SR    T S+P T +  S RA +  +AK  A           
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTT 1418

Query: 592  XXRDGTPWSTATSCGSATDRKL 527
                G    T T     T R++
Sbjct: 1419 RKSRGQNGDTTTKTKCITTRRV 1440


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +3

Query: 405  SLIRGIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHG-VP 581
            S++     G E    V++ +N+  IV   +  K+    +      +++  +V ++   V 
Sbjct: 6471 SVVEAFEAG-ETSKPVMIPINEDKIVEDTETFKLLLSSIEPTVTVISNQTIVNIIDDDVI 6529

Query: 582  SLVNDQVVNYILDDGXXXXXXIFQALTDSTVVVA 683
             ++N  VVN I +DG        Q+LT    +++
Sbjct: 6530 VIINQTVVNIIDNDGKLSSSSTRQSLTSLMTILS 6563


>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 265

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 507 KL*THHGRKLCQDHLQKLQPRSEAR 433
           +L  HHGR+L +DHL    PR   R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223


>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = -2

Query: 494 IMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFK 315
           ++ G Y  +++R ++  +  G+ T  SNER      V K    +   F   W    VYF 
Sbjct: 217 VITGLYSGVVHRLWHRKVP-GNQTTSSNERAKSKKRVLKMLVAIVLAFALCWLPYHVYFF 275

Query: 314 IHNTKY 297
           + N  Y
Sbjct: 276 LENYYY 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,651,167
Number of Sequences: 59808
Number of extensions: 486059
Number of successful extensions: 1368
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1365
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)