Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c06r
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    32   0.38 
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    32   0.38 
At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    32   0.50 
At1g69390.1 68414.m07966 chloroplast division protein, putative ...    30   2.0  
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica...    29   2.6  
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    28   6.1  
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A...    28   6.1  
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A...    28   6.1  

>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -2

Query: 746 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 579
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 285 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = -2

Query: 746 ELSADTSNQDLE-EKLY--NSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRR 579
           +L  +  NQ  E EKL+  NS L+  Y  ++  S ++E+Q K  + QNV    ++DK R
Sbjct: 286 KLLMEIDNQSSEIEKLFEENSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 599 LIIDKRRNTMEYCYKLWVGNGQEIVRKYFPLNF 501
           +++D +    EY  KL + +G +   KYFPL F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 773 MLAASAGVVELSADTSNQDLEEKLYNSILTGDYD 672
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|P41410
           DNA repair protein rhp54 (RAD54 homolog)
           {Schizosaccharomyces pombe}; contains PFam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain
          Length = 1256

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +1

Query: 58  PATSPSCPTALRSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSALLPP 234
           P  S   P+A  S   ++++P  K  L+    +  + +F +L  WKN    V+ A++ P
Sbjct: 648 PVASSDMPSAEESDNVWSLIPQLKRKLH----LHQKKAFEFL--WKNLAGSVVPAMMDP 700


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +1

Query: 58  PATSPSCPTAL----RSPEAFTIVPSSKASLNWRL*MKNRTSFSYLAGWKNHCSLVLSAL 225
           P ++PS P  L    R+P++ T +   K S N    + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSI-DRKNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 226 L 228
           L
Sbjct: 60  L 60


>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 390

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 707 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 591
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
           Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
           thaliana]; similar to cytochrome P450 71A4, Solanum
           melongena, PIR2:S36805
          Length = 497

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 707 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLII 591
           K+ + IL+G  D A     EY  Q K   IQN++NN ++
Sbjct: 103 KVVDKILSGGRDVAFAPYGEYWRQMKSICIQNLLNNKMV 141


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,659
Number of Sequences: 28952
Number of extensions: 328133
Number of successful extensions: 869
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)