Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c06f
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7) 25 1.4
SB_52928| Best HMM Match : PKD (HMM E-Value=0) 29 4.1
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 29 4.1
SB_42815| Best HMM Match : rve (HMM E-Value=0.00022) 29 4.1
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 27 9.4
>SB_18417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 441
Score = 33.5 bits (73), Expect = 0.14
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = -2
Query: 302 CRPTACSSTPWCSVSCQ*SGC*LHSG*WSPCLGSHIPSSDGQHCRSRR*GCCCTVSPRGL 123
C+ CS++ C SC GC L+ + + C+SR G CT S G
Sbjct: 224 CQQVVCSASGKCDQSCDGEGCNLYCSEGAKTCNQKCQGACVTDCKSRWCGVTCTGS--GC 281
Query: 122 G*KCP 108
KCP
Sbjct: 282 DVKCP 286
>SB_12544| Best HMM Match : DUF1218 (HMM E-Value=2.7)
Length = 290
Score = 25.4 bits (53), Expect(2) = 1.4
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +2
Query: 236 VNNLIIDKRRNTMEYCYKLWVGNGQEIV 319
+++L++ +++ YC+ NGQ+IV
Sbjct: 130 IHDLLLSLQKHLFAYCHNATSNNGQDIV 157
Score = 23.4 bits (48), Expect(2) = 1.4
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 317 VRKYFPLNFRLIMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKH 469
+R YF L+M+G ++ + +L L S R+ G G D H
Sbjct: 183 IRYYFACFQELLMSGPANSLLQSHLSLFLPCAGEILGSVYRLLVGHGSDTH 233
>SB_52928| Best HMM Match : PKD (HMM E-Value=0)
Length = 1624
Score = 28.7 bits (61), Expect = 4.1
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Frame = -1
Query: 363 FPAMMSLKFNGKYFLTISCPLPTHSL*QYSMVFRLLSMIRLLTTFWMMEPLP---WLSYS 193
FPAM +L NG + +++ SL ++ R R L M P+ W S
Sbjct: 519 FPAMAALTMNGSHAVSLWSYGDGSSLKKHESGPRQFITSRHLYAHTGMFPVTVTVWNRLS 578
Query: 192 KL*RTALS*SPVRMLLYSFSSRSWLEVSADSSTTPALAASMHIANTTRSFILL 34
K TAL+ V++ + + S S L S +S T + + H T S+ ++
Sbjct: 579 KKNETALAYVSVQVPVTNISVPSDLTASLGNSVTFTVKITSHETPTNASYYII 631
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 28.7 bits (61), Expect = 4.1
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Frame = +2
Query: 401 LKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLKMS---- 568
L+ GST S++ IA +T L S F R Y H T Y YL +S
Sbjct: 868 LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920
Query: 569 -TTTCNCNSRDRVV 607
T C NSRDRV+
Sbjct: 921 CTQACRLNSRDRVL 934
>SB_42815| Best HMM Match : rve (HMM E-Value=0.00022)
Length = 1514
Score = 28.7 bits (61), Expect = 4.1
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Frame = +3
Query: 75 SPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAWNM-RAKARAPXXXXXXXXXX 251
+PP+R S R+ SR T S+P T + S RA + +AK A
Sbjct: 1359 APPSRTSTPRSRSTPRSRSRSRTRTPSTPFTPSTTSSRASSRGKAKGGAKTTKTTKKCTT 1418
Query: 252 XXXDGTPWSTATSCGSATDRKL 317
G T T T R++
Sbjct: 1419 RKSRGQNGDTTTKTKCITTRRV 1440
>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 7645
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Frame = -3
Query: 439 SLIRGIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLHG-VP 263
S++ G E V++ +N+ IV + K+ + +++ +V ++ V
Sbjct: 6471 SVVEAFEAG-ETSKPVMIPINEDKIVEDTETFKLLLSSIEPTVTVISNQTIVNIIDDDVI 6529
Query: 262 SLVNDQVVNYILDDGXXXXXLIFQALTDSTVVVA 161
++N VVN I +DG Q+LT +++
Sbjct: 6530 VIINQTVVNIIDNDGKLSSSSTRQSLTSLMTILS 6563
>SB_20858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 337 KL*THHGRKLCQDHLQKLQPRSEAR 411
+L HHGR+L +DHL PR R
Sbjct: 199 RLLKHHGRELIKDHLDLPLPRQPKR 223
>SB_53155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = +2
Query: 350 IMAGNYVKIIYRNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFK 529
++ G Y +++R ++ + G+ T SNER V K + F W VYF
Sbjct: 217 VITGLYSGVVHRLWHRKVP-GNQTTSSNERAKSKKRVLKMLVAIVLAFALCWLPYHVYFF 275
Query: 530 IHNTKY 547
+ N Y
Sbjct: 276 LENYYY 281
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Frame = +3
Query: 126 TSRRNCTTASSPATTTVLS------VRAWNMRAKARAP 221
TSR NC + P +T ++S +R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,060,738
Number of Sequences: 59808
Number of extensions: 391989
Number of successful extensions: 1094
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -