Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c06f
(627 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 27 0.15
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 25 0.80
DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex det... 23 3.2
DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex det... 23 3.2
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 22 4.3
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 5.6
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 21 7.4
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 21 7.4
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.8
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 9.8
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.1 bits (57), Expect = 0.15
Identities = 22/87 (25%), Positives = 40/87 (45%)
Frame = +2
Query: 32 PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 211
P +KLLV+ + + + ++ E+++ ++IL G YD+ +R S E + G
Sbjct: 3 PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57
Query: 212 KGSIIQNVVNNLIIDKRRNTMEYCYKL 292
+ N+ I TMEY +L
Sbjct: 58 PAVVRVNIFVRSISKIDDVTMEYSVQL 84
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 24.6 bits (51), Expect = 0.80
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +2
Query: 32 PNKMKLLVVFAMCMLAASAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQG 211
P +KLLV+ + + + ++ E+++ ++IL G YD+ +R S E + G
Sbjct: 3 PGVLKLLVLLTFLLHPSRC----TQGKVNYREKEKEVLDNIL-GGYDARIRPSGENATDG 57
Query: 212 KGSIIQNVVNNLIIDKRRNTMEYCYKL 292
+ N+ I MEY +L
Sbjct: 58 PAIVRVNLFVRSIATISDIKMEYSVQL 84
>DQ325121-1|ABD14135.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325120-1|ABD14134.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325119-1|ABD14133.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325118-1|ABD14132.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325117-1|ABD14131.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325116-1|ABD14130.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>DQ325114-1|ABD14128.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.6 bits (46), Expect = 3.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 506 ENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
E NR Y K+HN K + L T+ N SR R
Sbjct: 14 EKNRRYEKLHNEK--EKLLEERTSRNRYSRSR 43
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 22.2 bits (45), Expect = 4.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 108 ADSSTTPALAASMHIANTTRSFILLGAFQM 19
A+ + +A +HI+N T SF L G F++
Sbjct: 396 ANKMESSGMAGRVHISNATLSF-LNGEFEV 424
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 5.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 166 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSISDGLQVC 5
+ GE V FL ++V DA+ + YN+ V + SD L+VC
Sbjct: 4 IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 5.6
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 166 VAGEDAVVQFLLEVLVRSVRG*FNDARAGGEHAHRKYNEKFHFVRSISDGLQVC 5
+ GE V FL ++V DA+ + YN+ V + SD L+VC
Sbjct: 4 IIGETLRVWFLSALVVHGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVLRVC 57
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 503 WENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
+ +R Y K+HN K + + N SR+R
Sbjct: 12 YRKDRRYEKLHNEKEKLLEERTNRKRNSRSRER 44
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.4 bits (43), Expect = 7.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 503 WENNRVYFKIHNTKYNQYLKMSTTTCNCNSRDR 601
+ +R Y K+HN K + + N SR+R
Sbjct: 12 YRKDRRYEKLHNEKEKLLEERTNRKRNSRSRER 44
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.8
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 452 DGVDKHTELVSWK 490
D +D+HT V+WK
Sbjct: 986 DDLDQHTLKVTWK 998
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 9.8
Identities = 8/26 (30%), Positives = 12/26 (46%)
Frame = -1
Query: 279 YSMVFRLLSMIRLLTTFWMMEPLPWL 202
Y+M F T F ++P PW+
Sbjct: 213 YNMTFAQNGPFNTTTIFVPVKPCPWI 238
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,766
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 20
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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