Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c05f
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.081
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.19
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.57
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 1.3
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo... 27 1.7
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 26 4.0
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 4.0
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 26 4.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.3
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 26 5.3
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 5.3
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 25 7.0
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 25 7.0
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 7.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 9.3
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 25 9.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.3
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.081
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 617
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 618 SNTTGTLS 641
+T + S
Sbjct: 361 PTSTSSTS 368
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 617
+TP P S S+P P T+ + S P T ST + + + S+T + P P
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 618 SNTTGTLS 641
+T + S
Sbjct: 307 PTSTSSTS 314
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTV-IAPLTP 617
VTP P S S PP +T T S P +++ S T + T +ST + P P
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVP 414
Query: 618 SNTTGT 635
++ T
Sbjct: 415 PTSSST 420
Score = 29.9 bits (64), Expect = 0.33
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +3
Query: 447 PKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTPSN 623
P T + S P P T+ TS S PP NST + +T V + SST P P++
Sbjct: 264 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNST-TPVTPTVPPTSTSSTSTPP-PPAS 321
Query: 624 TTGT 635
T+ T
Sbjct: 322 TSST 325
Score = 29.5 bits (63), Expect = 0.43
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLP-PCWKTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAPLTP 617
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 618 S 620
+
Sbjct: 250 T 250
Score = 29.1 bits (62), Expect = 0.57
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 432 LHSVTPKTKPARKSPGSLPPCW-KTTEYTSRSCPPKTNST*SSITRKVLVMTVSSTVIAP 608
L++ TP T P S S W TT T S T+ST +T T ++ +
Sbjct: 598 LYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSI 657
Query: 609 LTPSNTTGTLS 641
T S++T T S
Sbjct: 658 STSSSSTATSS 668
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -1
Query: 550 QVLFVFGGHDLEVYSVVFQHGGK 482
+V +VF GH+ ++YS+ F H G+
Sbjct: 393 KVRYVFSGHEQDIYSLDFSHNGR 415
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 167 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 310
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 134 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 250
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 739
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 570 PFVLSSFRYCLSSVDMILKYTLLFSNTGVNFQETFLLVLSLESPNAILLW 421
PF+L++ R C D +KY L+ + F + L+V +L A+L W
Sbjct: 574 PFLLATLRMC-GWGDNQIKYLLVGNPVAYWFATSSLIVFALFVVGAVLAW 622
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 625 VFEGVSGAITVDDTVIT 575
V G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 4.0
Identities = 26/96 (27%), Positives = 42/96 (43%)
Frame = -1
Query: 592 DDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVVVLL 413
D + + +R+ + GG E YS + Q KL + N VVLL
Sbjct: 1233 DTERVLKIYRLFFEAEMTSLGGSAEEKYSWLEQQNSKLKE-----LAQRLNTFNAHVVLL 1287
Query: 412 VDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 305
D + G + + L LL +D +++ +V FDDF+
Sbjct: 1288 QD-IHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 523 DLEVYSVVFQHGGKLPGDFLAGFVFGVTECNFVV 422
DLE +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 371 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 463
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 604 AITVDDTVITRTFRVIELQVLFVFGGHDLEVYSVVFQHGGK 482
A V+D I R + + + +V + GH+ E+YS+ F GK
Sbjct: 350 ATGVEDQQI-RIWDIAQKRVYRLLTGHEQEIYSLDFSKDGK 389
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 5.3
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 270 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 91
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 90 EASAHTARTKA 58
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -2
Query: 228 SLITSPFFSFRYSEHLAIAVSYSP------MTTLIYSCSASTSSVLGASVALEASAHTAR 67
+LI SP S S ++ V S M L+Y+ S + +S+ A + L+ + T
Sbjct: 284 ALIYSPDLSMDSSNYVQSVVQTSSSILNYSMKKLLYNASFAITSLFNALLILDPKSSTFI 343
Query: 66 TKANKVSLI 40
+ N VSLI
Sbjct: 344 FQENVVSLI 352
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 7.0
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Frame = +2
Query: 314 VKSYFPIQFRVIFTEQTVKLINKRDHHALKL----IDQQNH-NKIAFGDSKDKTSKKVSW 478
+K Y P + + VK IN+ D LKL + N + I+FG KD SK +S
Sbjct: 139 IKKYSPTSLEL----EQVKEINRLDGLLLKLQLGDVPSVNWLDDISFGKIKDFRSKHMSL 194
Query: 479 KFTPVLENNRVYFKIMSTEDKQYL-KLDN-TKGSSDDRIIYGDSTADTFKH 625
P+L + + F + Y K +N SS D + DS A+ KH
Sbjct: 195 VTIPILYLDFLQFSFPVVFQRSYYPKSENRVYYSSFDLELNLDSPAE-LKH 244
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = +2
Query: 353 TEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMST 532
+ T K +N+++H+ L L ++ FG S D +S ++ + +N YF ++ +
Sbjct: 146 SSDTNKKVNRKEHNELSLSHLSFNDTSDFG-SSDLSSSEIE---STENDNKAPYFSLLYS 201
Query: 533 EDKQYLK 553
+ ++K
Sbjct: 202 DGFDFIK 208
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 574 RTFRVIELQVLFVFGGHDLEVYSVVFQ 494
R +RV + L+ GH L +YSV+++
Sbjct: 530 RIWRVSTGECLYHLRGHSLRIYSVLYE 556
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 228 SLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSV 112
SL+ S FFS YSE + + + IYS S S S+
Sbjct: 6 SLLWSIFFSIVYSEKTLLNFKHYELCNGIYSKSESGGSL 44
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 441 VTPKTKPARKSPGSLPPCWKTTEYTSRSCPPKTN-ST*SSITRKVLVMTVSSTVIAPLTP 617
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 618 SNTT 629
NTT
Sbjct: 128 VNTT 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,233
Number of Sequences: 5004
Number of extensions: 59081
Number of successful extensions: 263
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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