Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03r
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    27   0.13 
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     25   0.68 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    25   0.90 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           25   0.90 
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.8  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   6.3  

>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 729 PXLMEPFKVMTFSETTPFIICSRHWIT 649
           P     F V+ F  +  FII S+HW+T
Sbjct: 115 PVATMSFYVLNFFGSIQFIIISKHWVT 141


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 703 HLERFH*XRCDPSQP 747
           HLER    RCDP +P
Sbjct: 176 HLERLREERCDPDRP 190


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 139 FNNHNALSVHKDVYYIRKFIIYFSSMFLNHTQIDYTRNIVLSERIIK**FVSLLYRWFQN 318
           +  H  L + K+ +Y R    Y +       +I+    +VLSER IK  F +   +W ++
Sbjct: 240 YTRHQILELEKEFHYNR----YLT----RRRRIEIAHTLVLSERQIKIWFQNRRMKWKKD 291

Query: 319 N 321
           N
Sbjct: 292 N 292



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/81 (20%), Positives = 28/81 (34%)
 Frame = -2

Query: 763 GYARXEAVMDRTXINGTFQGDDVFGDHALHHLFPTLDHAVLPYLYPVFLDLCQKYRANFR 584
           GY   +        NG   G+        HH  P + H + P +      +C+       
Sbjct: 63  GYHNHQNYNSNVLSNGYGYGNYYHPQLHSHH-GPPIHHQIRPPILHDTQPMCESLNTQPP 121

Query: 583 MTSSLDLFIGQIKMTLKTEPN 521
           +TSS ++      +T    PN
Sbjct: 122 VTSSSNILQNLADITPNVTPN 142


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 139 FNNHNALSVHKDVYYIRKFIIYFSSMFLNHTQIDYTRNIVLSERIIK**FVSLLYRWFQN 318
           +  H  L + K+ +Y R    Y +       +I+    +VLSER IK  F +   +W ++
Sbjct: 240 YTRHQILELEKEFHYNR----YLT----RRRRIEIAHTLVLSERQIKIWFQNRRMKWKKD 291

Query: 319 N 321
           N
Sbjct: 292 N 292



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/81 (20%), Positives = 28/81 (34%)
 Frame = -2

Query: 763 GYARXEAVMDRTXINGTFQGDDVFGDHALHHLFPTLDHAVLPYLYPVFLDLCQKYRANFR 584
           GY   +        NG   G+        HH  P + H + P +      +C+       
Sbjct: 63  GYHNHQNYNSNVLSNGYGYGNYYHPQLHSHH-GPPIHHQIRPPILHDTQPMCESLNTQPP 121

Query: 583 MTSSLDLFIGQIKMTLKTEPN 521
           +TSS ++      +T    PN
Sbjct: 122 VTSSSNILQNLADITPNVTPN 142


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +1

Query: 115 FLLLSLIFFNNHNALS 162
           F++L+++FF   +ALS
Sbjct: 49  FIILTIVFFEKRSALS 64


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 17/81 (20%), Positives = 28/81 (34%)
 Frame = -2

Query: 763 GYARXEAVMDRTXINGTFQGDDVFGDHALHHLFPTLDHAVLPYLYPVFLDLCQKYRANFR 584
           GY   +        NG   G+        HH  P + H + P +      +C+       
Sbjct: 63  GYHNHQNYNSNVLSNGYGYGNYYHPQLHSHH-GPPIHHQIRPPILHDTQPMCESLNTQPP 121

Query: 583 MTSSLDLFIGQIKMTLKTEPN 521
           +TSS ++      +T    PN
Sbjct: 122 VTSSSNILQNLADITPNVTPN 142


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,164
Number of Sequences: 336
Number of extensions: 3742
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)