Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03r
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   4.0  
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch...    26   5.3  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   7.0  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.2  

>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +1

Query: 94  FFQMCFAFLLLSLIFFNNHNALSVHKDVYYIRKFIIYFSSMFLNHTQ 234
           FFQ   AF LLS+I    ++  S+ K ++ I   II+F     N TQ
Sbjct: 236 FFQNILAFTLLSIISPVAYSIASLIKRIFVIVVSIIWFQQA-TNFTQ 281


>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 634 DRVTRRDPMSGTDDEGRGL-RKRHH 705
           DR  RRD +S    EG GL RKR H
Sbjct: 109 DRKERRDGVSPFSPEGEGLERKREH 133


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 705 VMTFSETTPFIICSRHWITPCYPICI-QFS*IYVRSIAPILE 583
           V   SE T F +   H +  CY +CI +F+   +  +A +LE
Sbjct: 543 VRYISELTKFQLMPFHMVFECYKLCINEFTPFDLEVLALLLE 584


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 697 VFGDHALHHLFPTLDHAVLPYLYPVFLD 614
           VFG H+LH  FP    + L Y+ PVF D
Sbjct: 250 VFGSHSLHS-FP----SALEYVVPVFSD 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,254
Number of Sequences: 5004
Number of extensions: 56522
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)