Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03r
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AL117207-12|CAD88220.1|  324|Caenorhabditis elegans Hypothetical...    30   2.1  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    28   8.6  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    28   8.6  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 638 G*HGVIQCREQMMKGVVSENVITLKGSINXGAIHHSLXSCI 760
           G  G  +  E+ +KG +  N+I+LKG  + G I  SL + I
Sbjct: 308 GPSGNDELEEKFLKGSIERNMISLKGHRSVGGIRASLYNAI 348


>AL117207-12|CAD88220.1|  324|Caenorhabditis elegans Hypothetical
           protein Y60A3A.22 protein.
          Length = 324

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 LSLIFFNNHNALSVHKDVYYIRKFIIYF 207
           L L FF  H  ++V  DV+ I KFI YF
Sbjct: 109 LLLCFFKKHQTIAVIIDVHVIPKFIPYF 136


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 88  LIFFQMCFA--FLLLSLIFFNNHNALSVHKDVYYIRKFIIYFSSMFLNHTQIDYTRNIVL 261
           L FF   F    +L+ L+FF     LS  K +Y+     +YFS   +    +   RN+ L
Sbjct: 18  LCFFVFPFVSFIILMFLVFFTGKKCLSAFKLIYFYN--FLYFSPNCVETIFVSLGRNLFL 75


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
            protein Y71F9AL.17 protein.
          Length = 1232

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 702  MTFSETTPFIICSRHWITPCY---PIC 631
            +T+ E  PF++CSR ++ P Y   P+C
Sbjct: 1167 LTYDEHNPFVVCSRQFV-PLYRGRPLC 1192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,856
Number of Sequences: 27780
Number of extensions: 309526
Number of successful extensions: 747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)