Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03r
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   7.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   7.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.4  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 YNQKIYFKYTVVN 454
           YN+K+Y+K  ++N
Sbjct: 100 YNKKLYYKNYIIN 112


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 YNQKIYFKYTVVN 454
           YN+K+Y+K  ++N
Sbjct: 111 YNKKLYYKNYIIN 123


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 YNQKIYFKYTVVN 454
           YN+K+Y+K  ++N
Sbjct: 341 YNKKLYYKNYIIN 353


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = -3

Query: 492 YNQKIYFKYTVVN 454
           YN+K+Y+K  ++N
Sbjct: 336 YNKKLYYKNYIIN 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 61  YASTSLDLPYN*LW*CVLF 5
           Y S  L+LP + +W C+ F
Sbjct: 363 YPSAVLELPGSSIWSCLFF 381


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 61  YASTSLDLPYN*LW*CVLF 5
           Y S  L+LP + +W C+ F
Sbjct: 416 YPSAVLELPGSSIWSCLFF 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,874
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)