Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03r
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1) ...    34   0.12 
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati...    33   0.28 
At1g40230.1 68414.m04784 hypothetical protein                          29   2.6  
At3g46980.2 68416.m05102 transporter-related low similarity to b...    29   4.6  
At3g46980.1 68416.m05101 transporter-related low similarity to b...    29   4.6  

>At3g61580.1 68416.m06897 delta-8 sphingolipid desaturase (SLD1)
           identical to delta-8 sphingolipid desaturase GI:3819710
           from [Arabidopsis thaliana]; contains Pfam profile
           PF00487: Fatty acid desaturase; contains Pfam profile
           PF00173: Heme/Steroid binding domain
          Length = 449

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = -2

Query: 676 HHLFPTLDHAVLPYLYPVFLDLCQKYRANFRMTSSLDLFIGQIKMTLKT 530
           HHLFP L    L  + PV  +LC+K+   +R  S  +  +  I  TLKT
Sbjct: 377 HHLFPRLPRCHLRKVSPVVQELCKKHNLPYRSMSWFEANVLTIN-TLKT 424


>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
           similar to delta-8 sphingolipid desaturase GI:3819708
           from [Brassica napus]
          Length = 449

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -2

Query: 676 HHLFPTLDHAVLPYLYPVFLDLCQKYRANFRMTSSLDLFIGQIKMTLK 533
           HHLFP L    L  + PV  +LC+K+   +R  S  +  +  I+ TLK
Sbjct: 377 HHLFPRLPRCHLRTVSPVVKELCKKHNLPYRSLSWWEANVWTIR-TLK 423


>At1g40230.1 68414.m04784 hypothetical protein
          Length = 303

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/70 (27%), Positives = 31/70 (44%)
 Frame = -2

Query: 715 TFQGDDVFGDHALHHLFPTLDHAVLPYLYPVFLDLCQKYRANFRMTSSLDLFIGQIKMTL 536
           TF    VF D+ +  L P   H++ PY +P    L    R+  +  S   L + Q  +T+
Sbjct: 25  TFVPPRVFRDNKISSLLP--HHSISPYPFPPTSSLFLSKRSTSKTHSHSRLSLDQTSLTI 82

Query: 535 KTEPNILDNN 506
                 LD++
Sbjct: 83  SLPHQTLDHS 92


>At3g46980.2 68416.m05102 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 469

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 103 MCFAFLLLSLIFFNNHNALSVHKD 174
           MC++  + S I F+N NAL +H D
Sbjct: 1   MCYSLSIQSSIDFHNRNALKIHGD 24


>At3g46980.1 68416.m05101 transporter-related low similarity to
           brain specific Na+-dependent inorganic phosphate
           cotransporter from [Rattus norvegicus] GI:507415, [Homo
           sapiens] GI:7328925, vesicular glutamate transporter 3
           from [Rattus norvegicus] GI:21685382; contains Pfam
           profile PF00083: major facilitator superfamily protein
          Length = 533

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 103 MCFAFLLLSLIFFNNHNALSVHKD 174
           MC++  + S I F+N NAL +H D
Sbjct: 1   MCYSLSIQSSIDFHNRNALKIHGD 24


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,916
Number of Sequences: 28952
Number of extensions: 263341
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)