Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03f
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    23   1.5  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   2.0  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   2.0  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   8.1  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    21   8.1  

>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 355 KVLEKYY--VREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVP 480
           ++ EK Y  +R+     + P TF D    + L+R ++E L+  P
Sbjct: 17  EIQEKVYQELRDIFQDSDRPITFNDTLQMKYLERVLLETLRMYP 60


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 230 MGFTISM---ISSRSIPVGRSGWSSLRVP 307
           +GF IS    I+S+ I   R  WS LR P
Sbjct: 27  LGFKISDNSGINSQMIDYSRPNWSYLRTP 55


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +2

Query: 230 MGFTISM---ISSRSIPVGRSGWSSLRVP 307
           +GF IS    I+S+ I   R  WS LR P
Sbjct: 47  LGFKISDNSGINSQMIDYSRPNWSYLRTP 75


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 28  GTYFINMAPKNVEYIEIAHRRAAE 99
           GT+F++    N   ++  HRR  E
Sbjct: 221 GTFFVSHKYTNYSAVQDLHRRGHE 244


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 28  GTYFINMAPKNVEYIEIAHRRAAE 99
           GT+F++    N   ++  HRR  E
Sbjct: 228 GTFFVSHKYTNYSAVQDLHRRGHE 251


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,042
Number of Sequences: 336
Number of extensions: 2706
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)