Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c03f
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch... 40 3e-04
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 31 0.13
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 29 0.53
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 27 2.8
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 26 3.7
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.9
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 26 4.9
SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 8.6
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 25 8.6
>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 129
Score = 39.9 bits (89), Expect = 3e-04
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 223 VHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKTPRN 402
V + +Y+ + FL+ HPGG E L G D + FE + ++LEK+Y+ +
Sbjct: 24 VKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNLLRTED 83
Query: 403 SP 408
P
Sbjct: 84 GP 85
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 31.1 bits (67), Expect = 0.13
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Frame = +1
Query: 40 INMAPKNVEYIEIAHRRAAEKKTHVS--FPQLKYPSLRDEGLR-DPVQWLIGKSMDDGA- 207
I+ A NVE+ E RR K +V+ F QL + L G V+ I + ++ A
Sbjct: 22 ISPASSNVEHSEKQPRRDFRVKKYVAPGFSQLNWSKLVASGQNLSGVEKPIPVTKEELAK 81
Query: 208 ----EGLWRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKY 372
E W G +YN + +L HP G + + G D T F H + +L+
Sbjct: 82 HKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVNEEALLKTS 141
Query: 373 YV 378
+V
Sbjct: 142 FV 143
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 29.1 bits (62), Expect = 0.53
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 217 WRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHH 336
W G +YN +L HP G + + G D T+ + HH
Sbjct: 87 WMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPYLKHH 127
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 111 MSFLFCCSSMSYFNIFNIFRRHINKIRAFT 22
MS + S S+ + N+F +H+N ++ F+
Sbjct: 564 MSCAYSLGSRSFSHALNVFEKHLNTLKHFS 593
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +1
Query: 340 NSSVNKVLEKYYVREAKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPKHIPS 495
NS N + +KYY+RE + + F+ +R A E K K + S
Sbjct: 152 NSLGNCMYDKYYLREVGKMKPPTYHFDSGDLFRKTDPAARESFIKKQKTLNS 203
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 4.9
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +2
Query: 182 SGNPWTTEQKAY 217
SG PW TE+KAY
Sbjct: 11 SGKPWKTEKKAY 22
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 436 RTLKRAVVEELKKVPKHIPSYADMIIDGLFATLLISSA-VSCW 561
R L R ++LKK PKHI + + DG L+ + +S W
Sbjct: 46 RDLIRRDTKKLKKKPKHIAVIIECVEDGGIEGLIHDACELSAW 88
>SPBC530.07c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 242
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 58 NVEYIEIAHRRAAEKKTHVSFPQLK-YPSLRDEGLRD 165
NV E+AH A K+++V P+LK P+ ++ L+D
Sbjct: 85 NVITPELAHFEARCKESNVEMPKLKPVPTSWEQALQD 121
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 25.0 bits (52), Expect = 8.6
Identities = 8/36 (22%), Positives = 20/36 (55%)
Frame = -2
Query: 342 IEVMTFEGFCDIGTLRELQPLRPTGMLLEEIIEIVN 235
+++M+ + +R +QP G+ +E+ E++N
Sbjct: 227 VDIMSRVNIATVAAIRSVQPCIKPGITEKELAEVIN 262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,772
Number of Sequences: 5004
Number of extensions: 48695
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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