Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c03f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 48 8e-06
05_01_0065 + 461182-461271,462222-462288,462408-462664 47 1e-05
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 46 2e-05
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 46 2e-05
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 43 2e-04
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 40 0.001
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 36 0.033
09_02_0530 + 10285844-10287217 33 0.13
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 33 0.18
08_01_0016 - 109152-109214,109296-109385,109853-109954,110046-11... 28 5.0
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 208 EGLWR-VHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVRE 384
E W VH +Y+ FL+ HPGGA+ + ++ GTD TE F++ H + +LE Y + E
Sbjct: 528 ESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAIH-SDKARGLLEMYRIGE 586
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 217 WRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 393
W + G +YN + FLE HPGG + L S G D T+ FE +++ ++++YYV + T
Sbjct: 24 WLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHSTTARAMMDEYYVGDIDT 83
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 223 VHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 393
VH +Y+ FL+ HPGGA+ + ++ GTD TE F++ H + +L+ Y + E T
Sbjct: 562 VHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRIGELIT 617
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 223 VHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAKT 393
VH +Y+ FL+ HPGGA+ + ++ GTD TE F++ H + +L+ Y + E T
Sbjct: 562 VHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAIH-SDKAKALLDTYRIGELIT 617
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +1
Query: 217 WRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYV 378
W + G +YN FLE HPGG + L S D T+ FE +++ ++++YYV
Sbjct: 22 WLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGHSTTARAMMDEYYV 76
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +1
Query: 223 VHNGIYNFNDFLEKHPGGAE-WLELSKGTDITEAFESHHLNSSVNKVLEKYYVREAK 390
+H +Y+ FLE HPGG + L S D TEAFE ++S ++ Y + K
Sbjct: 31 IHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGHSTSAISMMNNYLIGSIK 87
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 217 WRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVRE 384
W + G +Y+ + F+E+HPGG E L G D T F ++ +++ +Y + E
Sbjct: 23 WLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTATAKELMPQYCIGE 79
>09_02_0530 + 10285844-10287217
Length = 457
Score = 33.5 bits (73), Expect = 0.13
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Frame = +1
Query: 208 EGLW-RVHNGIYNFNDFLEKHPGGAEWLELSKGTDITEAFESHHLNSSVNKVLEKYYVRE 384
+ LW + +Y+ ++ HPGG L G D T+AF ++H S +L ++ V
Sbjct: 31 DDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFAAYH-PPSARPLLGRFLVGR 89
Query: 385 AKTPRNSPFTFEDDGFYRTLKRA-VVEELKKVPKHIPSYADMIIDGLFATLLISSAVSCW 561
+ SP + + L A + E + PK A M++ A + + S W
Sbjct: 90 LEDYTVSPASADFRRLLAQLSSAGLFERVGPTPK--VQVAGMLLLLCAALYCVLACASAW 147
Query: 562 A 564
A
Sbjct: 148 A 148
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 33.1 bits (72), Expect = 0.18
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 208 EGLWRVHNG-IYNFNDFLEKHPGGAEWLELSKGTDITEAF 324
+ +W V G +YN +++ HPGG + L + G D T F
Sbjct: 154 DSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>08_01_0016 -
109152-109214,109296-109385,109853-109954,110046-110213,
110510-110530,110836-110896,110987-111099,112125-112202,
112294-112434,112532-112696,112776-112868,113096-113162,
113285-113388,113896-114041,114303-114579
Length = 562
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 385 AKTPRNSPFTFEDDGFYRTLKRAVVEELKKVPKHIPSYADMIIDGLF 525
++TPR +PF ++D F LK+ + E V H+ S ++DG+F
Sbjct: 457 SRTPRVAPFLQKNDPFIAALKKELSEHTADV--HVQS---DVLDGMF 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,188,229
Number of Sequences: 37544
Number of extensions: 303773
Number of successful extensions: 803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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