Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c03f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.19 
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    24   1.0  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    24   1.0  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    24   1.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.4  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 420 FKSKRRIPRCFSFPNVIFLENFIHRRIEVMTFEGFCDIGTL 298
           F ++  I   F  PNVIFL+  + +   VM    F + G+L
Sbjct: 681 FLTEASIMGQFEHPNVIFLQGVVTKSNPVMIITEFMENGSL 721


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 424 DGFYRTLKRAVVEELKKV 477
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 424 DGFYRTLKRAVVEELKKV 477
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 424 DGFYRTLKRAVVEELKKV 477
           DG+Y+TL+ A+   +KKV
Sbjct: 82  DGWYQTLQSAISAHMKKV 99


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 541 SSAVSCWAXDYWVVMSAYLI 600
           ++ +SCW   Y++V+ A+ I
Sbjct: 66  AAVMSCWMNVYYIVILAWAI 85


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 238 YNFNDFLEKHPGGAEWLELSK 300
           YN   F +  PG  EW+ + K
Sbjct: 540 YNIIHFKQIEPGKYEWVRVGK 560


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 550 VSCWAXDYWVVMSAYLI 600
           +SCW   Y++++ A+ +
Sbjct: 107 LSCWTNIYYIIILAWAL 123


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 550 VSCWAXDYWVVMSAYLI 600
           +SCW   Y++++ A+ +
Sbjct: 160 LSCWTNIYYIIILAWAL 176


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 52  PKNVEYIEIAHRRAAEKKTHVSFPQLKYPSLRDEG 156
           P N E I+I +     ++THV F  L   +   +G
Sbjct: 372 PSNEETIDINNGAELMQETHVCFFSLLRDAFTSKG 406


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 520 LFATLLISSAVSCW 561
           LF  L+ +SAV CW
Sbjct: 315 LFVGLVGNSAVGCW 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,750
Number of Sequences: 438
Number of extensions: 3266
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)