Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c02f
(624 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 258 3e-69
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 252 1e-67
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 0.32
04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061 31 0.98
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.0
03_06_0610 + 35052455-35053429,35054936-35055511 29 4.0
06_02_0103 - 11829343-11829699,11831560-11831826,11832239-118325... 28 6.9
07_03_1503 + 27017933-27018063,27019668-27019727,27019996-270201... 27 9.2
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975... 27 9.2
04_04_1155 - 31308704-31309051,31309301-31309451,31309532-313097... 27 9.2
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 258 bits (632), Expect = 3e-69
Identities = 124/156 (79%), Positives = 139/156 (89%), Gaps = 1/156 (0%)
Frame = +3
Query: 159 EIKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTN 335
E+KLF RWS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCPIVERLTN
Sbjct: 10 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 69
Query: 336 SLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTV 515
SLMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG V
Sbjct: 70 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 129
Query: 516 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTXA 623
RRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKT A
Sbjct: 130 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIA 165
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 252 bits (618), Expect = 1e-67
Identities = 121/155 (78%), Positives = 137/155 (88%), Gaps = 1/155 (0%)
Frame = +3
Query: 162 IKLFGRWSCYDVQVSDMSLQDYISVKE-KYAKYLPHSAGRYAHKRFRKAQCPIVERLTNS 338
+KLF WS DVQV+D+SL DY++V K+A YLPH+AGRY+ KRFRKAQCP+VERLTNS
Sbjct: 12 VKLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNS 71
Query: 339 LMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVR 518
LMMHGRNNGKK+MAVRIVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VR
Sbjct: 72 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 131
Query: 519 RQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTXA 623
RQAVD+SPLRRVNQAI+LL TGARE+AFRNIKT A
Sbjct: 132 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIA 166
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -3
Query: 604 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 467
L+A+SR P + +I RR+G + + RR+ P +P +R PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>04_04_0446 - 25288154-25288863,25288949-25289135,25289331-25291061
Length = 875
Score = 30.7 bits (66), Expect = 0.98
Identities = 23/92 (25%), Positives = 39/92 (42%)
Frame = +3
Query: 102 EAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRY 281
+AGS+ V S + D+ E+K G + S S+ D +V E P S+ R
Sbjct: 578 DAGSIEVPVSSDCVSGDVDEVKSNGDLKSIHDETSPTSILD--TVFEDSNSNEPESSRRT 635
Query: 282 AHKRFRKAQCPIVERLTNSLMMHGRNNGKKLM 377
+ +CP ++ + S N+G L+
Sbjct: 636 SCTERVALRCPAIDSVARSFSWEDTNSGSPLL 667
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 94 T*PRQAAWLWKPCLYHKPPTF 156
T P Q +WLW+ L H P F
Sbjct: 88 TDPSQCSWLWREVLKHNPDAF 108
>03_06_0610 + 35052455-35053429,35054936-35055511
Length = 516
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = -2
Query: 212 HIRDLHIVATPSAEKLDFR---NVGGLW*RHGFHN-HAACLGYVVIPVLLGHDWYFSITK 45
++ ++V TP A L F GGLW +G + AAC+ V++ V+ DW+ +
Sbjct: 418 NLLSFYLVGTPVAVTLAFGARVGFGGLW--YGLLSAQAACVALVLLAVVWRTDWHLEALR 475
Query: 44 *K 39
K
Sbjct: 476 AK 477
>06_02_0103 -
11829343-11829699,11831560-11831826,11832239-11832559,
11833783-11833844,11835413-11835446,11835539-11835619
Length = 373
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/57 (28%), Positives = 31/57 (54%)
Frame = +3
Query: 93 DVAEAGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLP 263
++ G +VV L + +D P+ +L W+ +SDM+L+ IS ++ + Y+P
Sbjct: 215 EIVPGGRMVVSL--LVKRSDKPDTELIQPWTPAVTALSDMALRGVISKEKLDSFYIP 269
>07_03_1503 + 27017933-27018063,27019668-27019727,27019996-27020101,
27020254-27020325,27021008-27021061,27021707-27021856,
27022206-27022547,27022651-27024684,27024706-27024947,
27025658-27026235,27026329-27028183,27028533-27028851,
27028980-27029417
Length = 2126
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTG 428
+ L ++HG N ++++AV +K +I+HLL G
Sbjct: 1328 ISALVVGSVIHGVVNIERMVAVLKIKDGLDILHLLRG 1364
>05_05_0116 -
22496535-22496576,22496974-22497058,22497468-22497545,
22497656-22497803,22498612-22498771,22499056-22499058
Length = 171
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = -2
Query: 248 VLLFNGNVVLQRHIRDLHIVATPSAEK 168
+++F+G++V+ + I+DLH T E+
Sbjct: 57 IVMFDGHIVVYKFIQDLHFFVTGGEEE 83
>04_04_1155 -
31308704-31309051,31309301-31309451,31309532-31309763,
31309854-31310064,31310304-31310422,31310507-31310581,
31310789-31310990,31311075-31311454,31311569-31311633,
31311735-31311779,31312166-31312231,31312667-31312741,
31313022-31313093,31313659-31313727,31313813-31313884,
31313995-31314066,31314441-31314512,31314597-31314668,
31315091-31315162,31315279-31315474,31316094-31316202
Length = 924
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 381 RPSVFCHCSDRASLESL*GAPRLGTGLYGNACVHTCQLNEVNIL 250
RP+VF + R++ E+ + RLG G YG V+ +LN+ ++
Sbjct: 579 RPNVFSYSELRSATENFSSSNRLGEGGYG--AVYKGKLNDGRVV 620
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,753
Number of Sequences: 37544
Number of extensions: 355618
Number of successful extensions: 849
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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