Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c01r
         (476 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   5.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.7  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 170  PGGSFASATSMFNVPSEFKIADLL-----KKQSTNFLKAL 274
            PGGS  + +SMF+  S     D L     KK S++ L AL
Sbjct: 955  PGGSLGALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAAL 994


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 155  KPKAY*NSARIRPGKT 108
            KPK Y  SA + P KT
Sbjct: 1552 KPKGYLLSAAVSPSKT 1567


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 471 NSILYSMKSVVLICLAFAVFNCGADNVHLTE 379
           +S+ YSM S      A+   +CG D +H  E
Sbjct: 328 DSMGYSMGSAYDQSSAYDASSCGYDPMHAQE 358


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 269 ALSSEYCPVFAAFITSVLTPDSLTHSE 349
           AL  +Y P   AF+ +   PDS+   E
Sbjct: 191 ALKIKYNPFAKAFLDAKERPDSIYQRE 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,760
Number of Sequences: 336
Number of extensions: 1993
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11141978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)