Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10c01r
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    29   0.48 
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    26   2.6  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   2.6  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    25   7.9  

>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 28.7 bits (61), Expect = 0.48
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 86   ISKALSAASCPVLS-LHCSSTLW-ASDLLTPGGSFASATSMFNVPSEFKIADLLKKQSTN 259
            +SK LSA     L  + C   L+  +D+ TP G  A++ SMF++    +  D   +   N
Sbjct: 1453 VSKTLSAQDVSRLQKVSCGEHLYFGTDVFTPLGDMATSASMFSLDDSSEKTDAFTENFLN 1512


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 21/112 (18%), Positives = 45/112 (40%)
 Frame = -3

Query: 399 DNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILN 220
           D  HL +  +E   + T+ C  ++     +    ++ + S     K+F  C ++  +  N
Sbjct: 53  DAEHLGKRHREFLPRVTAYCTCDTFRVDLLFKFFQSRRSSHKTRPKQFDECIYSPYSYNN 112

Query: 219 SDGTLNMDVALAKLPPGVNKSEAQSVLEQCKDKTGQDAADKAFEIFQCYYKG 64
            + T  +   L      +N+  +Q  L+   +++G D     F    C+  G
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYG 164


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
 Frame = -3

Query: 393 VHLTETQKEKAKQYTSE----CVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 226
           V + +  K+  +Q  S+     VKE      V NAAKT    ED   KK         + 
Sbjct: 293 VEVAKESKDSKQQNVSDKKQVTVKEVPKKLSVKNAAKTTNRDEDSKGKKAKASPKVSQSS 352

Query: 225 LNSDGTLNMDVALAKLPPGVNK 160
           L ++GT     A+ K+  G NK
Sbjct: 353 LKANGT----TAIKKVKAGKNK 370


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 396 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAK 295
           N H++E  KE+A++Y  E   ES  +T      K
Sbjct: 17  NPHVSEEAKERARKYLKEHGSESHYTTGTTRGQK 50


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 230 ADLLKKQSTNFLKA-LSSEYCPVFAAFITSVLTPDSLT 340
           A L   Q TN +    SS  CP+F    T+ +TP + T
Sbjct: 37  AVLESSQDTNSVGGEASSTACPLFTTIYTNGITPGTTT 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,314
Number of Sequences: 5004
Number of extensions: 33157
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)