Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c01r
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 30 1.1
SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11) 29 2.6
SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11) 27 6.0
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034) 27 6.0
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012) 27 7.9
SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058) 27 7.9
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 119 VLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLK 244
VLS++C++ L TPG S ++++P EF ADL++
Sbjct: 207 VLSVYCAAVLLKESHYTPGPD-GSNLFIYHLPQEFTDADLMQ 247
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 119 VLSLHCSSTLWASDLLTPGGSFASATSMFNVPSEFKIADLLK 244
VLS++C++ L TPG S ++++P EF ADL++
Sbjct: 255 VLSVYCAAVLLKESHYTPGPD-GSNLFIYHLPQEFTDADLMQ 295
>SB_23038| Best HMM Match : EGF_2 (HMM E-Value=2.8e-11)
Length = 1477
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -3
Query: 285 YSEDKAFK-KFVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQSV 142
Y+ D F ++ +S +++ DG+ N+ VA+A LP G + + V
Sbjct: 1240 YTNDACFNGSLIIPLAIRSGLMDMDGSENLTVAVADLPQGYQLNSFREV 1288
>SB_18894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 28.3 bits (60), Expect = 3.4
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = +2
Query: 170 PGGSFASATSMFNVPSEFKIADLLKKQSTNFLKALSSEYCPVFAAFITSVLTPDSLTH 343
PGGS A +T +F V F T+FLK + P FIT+V S+ H
Sbjct: 455 PGGSAAEST-VFQVLDAFLGIRHHSPSRTSFLKLMRKHMPPKHNEFITAVENGPSVRH 511
>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 621
Score = 27.9 bits (59), Expect = 4.5
Identities = 10/40 (25%), Positives = 22/40 (55%)
Frame = -3
Query: 396 NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 277
N HL E+ ++ +C+K + + ++ ++ KTG+ E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292
>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 369 EKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFV-LCFFNKSAILNSDGTLNMDV 193
EK + VK SG++ V +K G+YS +AF + L S +L +D L M
Sbjct: 447 EKHDLDLEDAVKTSGIAEIVKTVSKPGKYSRREAFNVAINLVTDPNSIVLLTDLHLEMTS 506
Query: 192 ALAK 181
L K
Sbjct: 507 LLLK 510
>SB_14825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 27.9 bits (59), Expect = 4.5
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 333 ESGVSTEVINAAKTGQYSEDK-AFKKFVLCFFNKSAILNSDGTLNMDVALAKLPPG 169
+ G + +VI+ K+ + F K++ K A+LN G L +D L +LP G
Sbjct: 25 KDGAAQDVIDYIKSDKPDLTVYTFCKYLKTIKRKDAVLNLKGELTVDKHLVELPSG 80
>SB_23139| Best HMM Match : Flotillin (HMM E-Value=0.11)
Length = 1166
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 104 AASCPVLSLHCSSTLWASDLLTPGGSFASATSMFN 208
A+S PVL C W S + PGG F + SM +
Sbjct: 1034 ASSIPVLQGGCEQA-WESYAILPGGQFFRSLSMLH 1067
>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
Length = 352
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 390 HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 268
H +T+K+ + + E K S V T+ NAAKTG E A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230
>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
Length = 1551
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 408 CGADNVHLTETQKEKAKQYTSECVKESGVS 319
C +V +TE+Q ++K + +E K G+S
Sbjct: 1110 CSYPSVSITESQANQSKSFPTEYTKAQGIS 1139
>SB_3000| Best HMM Match : Extensin_2 (HMM E-Value=0.058)
Length = 1002
Score = 27.1 bits (57), Expect = 7.9
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Frame = -3
Query: 441 VLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFK 262
+L+ L A C V L+E E+ K+ + +KE ++ T + + K +
Sbjct: 632 MLVSLVEAEEKC-IQRVRLSE---EEVKEILQQRIKEEAAPQLSVSVYDTERNEKAKLHR 687
Query: 261 KFVLCFFNKSAILNSDGTLN-MDVALAKL--PPGVNKSEAQSVLEQCKDKTGQDAADKA 94
+ + + A+ + L+ + LA++ PP +++ EA + E+C Q DKA
Sbjct: 688 QELERKMQEEAMKKHETELDYLAPFLAQIGDPPRISRQEAYKLKEECLQDLKQRLIDKA 746
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,972
Number of Sequences: 59808
Number of extensions: 234066
Number of successful extensions: 689
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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