Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10c01r
(476 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 32 0.17
At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34... 30 0.93
At1g79360.1 68414.m09248 transporter-related low similarity to S... 30 0.93
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD... 29 1.2
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD... 29 1.2
At1g65670.1 68414.m07452 cytochrome P450 family protein similar ... 29 1.6
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 29 2.2
At4g15300.1 68417.m02342 cytochrome P450 family protein similar ... 29 2.2
At1g18620.1 68414.m02321 expressed protein 29 2.2
At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid t... 28 2.8
At3g30290.1 68416.m03825 cytochrome P450 family protein similar ... 28 2.8
At4g27010.1 68417.m03885 expressed protein ; expression support... 28 3.8
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 32.3 bits (70), Expect = 0.17
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = -3
Query: 336 KESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKS 157
K V +++ + + +YS D+ K + FF K +S+ L + A LP G + S
Sbjct: 379 KGRDVGEDLVKSLQNTKYSVDEKLDKTFINFFGKKTSASSETKLKAEDAYHSLPEG-SDS 437
Query: 156 EAQS 145
E+QS
Sbjct: 438 ESQS 441
>At3g01280.1 68416.m00035 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 29.9 bits (64), Expect = 0.93
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -3
Query: 339 VKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI-LNSDGTLNMDVALAKLPPGVN 163
VK G+ TE+ A+ Y + + +KF + F+ + + + S GT D+ L +
Sbjct: 2 VKGPGLYTEIGKKARDLLYKDHNSDQKFSITTFSPAGVAITSTGTKKGDLLLGDVAFQSR 61
Query: 162 KSEAQSVLEQCKDKT 118
+ + L+ C D T
Sbjct: 62 RKNITTDLKVCTDST 76
>At1g79360.1 68414.m09248 transporter-related low similarity to
SP|O76082 Organic cation/carnitine transporter 2 (Solute
carrier family 22, member 5) (High-affinity
sodium-dependent carnitine cotransporter) {Homo
sapiens}; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 527
Score = 29.9 bits (64), Expect = 0.93
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 55 CLGPFVVALEDLEGFIGCVLPGLILA 132
C G FV L + F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132
>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
family protein similar to tropinone reductase-I
GI:424160 from [Datura stramonium]
Length = 262
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 387 LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 250
L + K A ++ + ++ + V+ VIN + Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211
>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
family protein similar to tropinone reductase-I
GI:424160 from [Datura stramonium]
Length = 307
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 387 LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 250
L + K A ++ + ++ + V+ VIN + Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211
>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
Length = 482
Score = 29.1 bits (62), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 258 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQ 148
F F I+++D LNM++A PG+ KS AQ
Sbjct: 75 FRTSLFGAKVIISTDIELNMEIAKTNHAPGLTKSIAQ 111
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 186 LAQHPCSMYHLSSRLRIC 239
+A+ PCS++HLSS R+C
Sbjct: 831 IAELPCSIFHLSSLRRLC 848
>At4g15300.1 68417.m02342 cytochrome P450 family protein similar to
Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
[Arabidopsis thaliana]; contains Pfam profile: PF00067:
Cytochrome P450
Length = 487
Score = 28.7 bits (61), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 258 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKS 157
F F AI++ D LN+++A A PGV KS
Sbjct: 73 FRTSLFGDKAIISMDMELNLEMAKANSVPGVTKS 106
>At1g18620.1 68414.m02321 expressed protein
Length = 978
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -3
Query: 474 LNSILYSMKSVVLICLAFAVFNCGADNVHLTETQKEKAKQYTSECVKES 328
+NSI + SV IC + F C N+ + EK + ++EC + S
Sbjct: 50 VNSINFERDSVDAICQQRSAFQCQDSNLVSSNGLSEKLTRLSTECSRVS 98
>At4g33550.1 68417.m04768 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 115
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 438 LICLAFAVFNCGADNVHLTETQ 373
L+ LA A+F G+DNVH+ + Q
Sbjct: 9 LVILAIALFMIGSDNVHVAKAQ 30
>At3g30290.1 68416.m03825 cytochrome P450 family protein similar to
Cytochrome P450 85 (SP:Q43147) {Lycopersicon
esculentum}; similar to GB:C71417 from [Arabidopsis
thaliana] (Nature 391 (6666), 485-488 (1998))
Length = 408
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 258 FVLCFFNKSAILNSDGTLNMDVALAKLPPGVNKSEAQ 148
F F I++ D LNM++A PG+ KS A+
Sbjct: 5 FRTSLFGGKVIISMDNELNMEMAKTNRTPGITKSIAR 41
>At4g27010.1 68417.m03885 expressed protein ; expression supported
by MPSS
Length = 2535
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = -3
Query: 297 KTGQYSEDKAFKKFVLCFFN--KSAILNSDGTLNMDVALAKLPPGVNKSE---AQSVLEQ 133
K ++S KAF F + F K +L+S LN +K+ PG+ K + SVL
Sbjct: 186 KVKKHSTRKAFVGFAISFLEVGKPGLLSS--VLNKKEMYSKVLPGLGKDDDDTVASVLST 243
Query: 132 CKDK 121
KDK
Sbjct: 244 LKDK 247
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,465,655
Number of Sequences: 28952
Number of extensions: 168511
Number of successful extensions: 563
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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