Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24r
         (668 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YUY9 Cluster: Putative uncharacterized protein; n=2; ...    35   1.5  
UniRef50_Q9AVX7 Cluster: Putative uncharacterized protein; n=1; ...    33   4.7  
UniRef50_A0CW57 Cluster: Chromosome undetermined scaffold_3, who...    33   6.2  

>UniRef50_Q4YUY9 Cluster: Putative uncharacterized protein; n=2;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 536

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -1

Query: 464 NNLFKKKKNGAHLHGYLC-KYLKKNHLASVRIFLNK*IVVFMKHLSSQAHRMIRFFYNNA 288
           +N++ KK    +     C  ++K N        LN  I  F  HLS  AH+  R   N  
Sbjct: 354 SNIYNKKDYDRNKKLIYCYSFIKYNSWLKALKILNLPIDPF--HLSINAHKYFRKNNNTN 411

Query: 287 TN--FIYIWNCHMVMNSKSF 234
            N  F+YI+N H ++ +K F
Sbjct: 412 NNDSFLYIYNIHNILKNKHF 431


>UniRef50_Q9AVX7 Cluster: Putative uncharacterized protein; n=1;
           Guillardia theta|Rep: Putative uncharacterized protein -
           Guillardia theta (Cryptomonas phi)
          Length = 148

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 21/65 (32%), Positives = 37/65 (56%)
 Frame = +2

Query: 356 FIYLKKFEHSLSDFFLNIYINNHVNVHRXXXXXKDYLHHIQLT*KVFNNDIKEINRLYYY 535
           F++L+K++ + S FF N+   N+ N+ +     K+ L  I+   ++FN   KEIN+L+  
Sbjct: 29  FLFLEKYKTNFSSFFKNL--KNNYNLSKKIKVSKE-LFKIKEK-QLFNYFCKEINKLFKK 84

Query: 536 FRQSN 550
              SN
Sbjct: 85  LSSSN 89


>UniRef50_A0CW57 Cluster: Chromosome undetermined scaffold_3, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_3,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1133

 Score = 33.1 bits (72), Expect = 6.2
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 432 CTVFFFFEKIIYTIYN*PKKYLTTTSKR*IGCIITLDNLI 551
           C VFF  + I Y IYN  +K L   SK+ + C+I  D  I
Sbjct: 811 CLVFFSKQLIKYKIYNRKEKSLEELSKKFVRCLIDYDEKI 850


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 556,806,063
Number of Sequences: 1657284
Number of extensions: 10292751
Number of successful extensions: 21826
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21818
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)