Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24r
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    28   1.1  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.4  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   4.3  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   7.5  

>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 192 DLI-TSRIYVLQEKFKAFRIHYHMTVPYIYKVSCVVVKKTNHPVSLRTEMFHKNYDLF 362
           DLI T   +VL ++  +FR  Y     +  K S  + K+ +H  S +    HK+Y  F
Sbjct: 161 DLIRTDSHFVLNKELLSFRNDYEHRRKHYEKYSQCLNKQLDHFFSYKVTTVHKSYQRF 218


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 604 NSGAFDNQTSSRLISYLCIRLSKVIIQPIYLFDVV 500
           +S A  N++   +I+Y+ +   K+   PIYLF +V
Sbjct: 340 SSSARQNRSIGDIINYMAVDTQKISDLPIYLFIIV 374


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 269 WNCHMVMNSKSFEFLLQNINP 207
           W C + +N+ +F+FL +  NP
Sbjct: 121 WKCPLTINTTTFKFLTRKNNP 141


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 46  SLQRLVTRPHY*PILQKQFTLKLLIYNFILPLHLLEMIDE 165
           S  +L  R HY PIL +   +KL   +  +   ++E++DE
Sbjct: 762 SANKLDLRQHYIPILYESLPVKLSTGHSDVVPEIIELMDE 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,539,749
Number of Sequences: 5004
Number of extensions: 50051
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)