Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24r
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AF024501-1|AAZ91348.1|  590|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 282 VSCVVVKKTNHPVSLRTEMF 341
           +SC++VK T+HP+    +MF
Sbjct: 355 ISCILVKSTDHPMLFELQMF 374


>AF024501-1|AAZ91348.1|  590|Caenorhabditis elegans Hypothetical
           protein F39E9.4 protein.
          Length = 590

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 303 KTNHPVSLRTEMFHKNYDLFI*KNSN 380
           KT +  SLRT++F   ++LF  KN+N
Sbjct: 189 KTGNWSSLRTKIFSARFELFFGKNNN 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,873
Number of Sequences: 27780
Number of extensions: 268972
Number of successful extensions: 504
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)