Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24f
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    29   0.55 
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    27   2.2  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    26   3.9  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.2  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   5.2  

>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 29.1 bits (62), Expect = 0.55
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 267 NCLLHLFRIYDKYNNTSQKFFKTPILIKKNIQITVSKVWKFFKR 136
           N L+   ++Y KY   SQ F  + I IKK + I V   W+ F++
Sbjct: 470 NQLMVFQKLYSKYCTESQHFINSWINIKKELHI-VPVNWEIFEK 512


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = -1

Query: 387 LGFHFTKLLTELYIELQNFTQIELTLKNTVKFHR**LFTENCLLHLFRIYDKYNNTSQKF 208
           L +H      E  I   ++ Q  L L     F    LF E  ++  FR    +NN  Q F
Sbjct: 321 LDYHLKSFFMEKSIS--SYIQKSLALLQLTFFDENKLFREILIMDDFRFMHYWNNLCQSF 378

Query: 207 F---KTPILIKKNI 175
           F   ++ IL +KN+
Sbjct: 379 FENSRSLILHEKNL 392


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 551 CVIPWLILSSPICTL 507
           C   WLILS+P+CT+
Sbjct: 278 CSCWWLILSTPLCTI 292


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 414 ESSTIPQQIRDSASHL-TPTNISNKITQRNMS*GTYW**EDEPWNH 548
           ES T+ + +++  + +    N  NK+   NM  G++W    + W++
Sbjct: 348 ESETVERLVKEHVTKVFNSLNSKNKLAFNNMHSGSWWISSPDHWHY 393


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +1

Query: 313 RKFNLREVLKFYIKFCE*FRK 375
           RKFNL++ L+ +IK CE +RK
Sbjct: 60  RKFNLQQSLEMFIK-CEKWRK 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,059
Number of Sequences: 5004
Number of extensions: 50190
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)