Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24f
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0864 - 21148289-21148684                                         29   4.0  
12_02_0915 - 24252495-24253079,24253560-24254759,24255234-242553...    28   5.3  
12_01_1029 + 10547341-10548108                                         28   5.3  
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542...    27   9.3  

>10_08_0864 - 21148289-21148684
          Length = 131

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 134 SLLKNFHTLDTVI*IFFLIKIGVLKNFCEVLLYLS*ILNKCNK 262
           SLL+    LD  + +   +K  VL     + + LS ILNKCNK
Sbjct: 81  SLLQGIADLDAAVCLCTAVKANVLGINLNLPVDLSLILNKCNK 123


>12_02_0915 -
           24252495-24253079,24253560-24254759,24255234-24255303,
           24257127-24257188
          Length = 638

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 629 GMAGAGIDRIECRTPPP--RDPRGSAARCVIPWLILS 525
           G++G G D+  C+ PPP     +GS    ++P  ILS
Sbjct: 564 GVSGGGGDQAACKKPPPSSASAKGSGGGGLMPKKILS 600


>12_01_1029 + 10547341-10548108
          Length = 255

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +1

Query: 559 AEPRGSRGGGVRH 597
           A+PRG RGGG+RH
Sbjct: 85  AKPRGGRGGGLRH 97


>03_05_0903 -
           28652447-28653346,28653890-28654056,28654075-28654264,
           28654916-28655210,28655514-28655760,28656017-28656443
          Length = 741

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 623 AGAGIDRIECRTPPPRDPRGSA 558
           AGA +   +  TPPPR+P G A
Sbjct: 43  AGAAVAPADPETPPPREPVGGA 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,190,410
Number of Sequences: 37544
Number of extensions: 308079
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)