Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24f
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U97592-3|AAB52869.1|  304|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched relat...    28   6.3  

>Z81015-4|CAB02658.2| 1170|Caenorhabditis elegans Hypothetical
           protein C11E4.6 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 455 SSHSN-KYFKQNNAT*HVIRYILVMRG*AMESRSAPPSPEDPGEAVFDTRCGR 610
           + H N  Y K NN T   I    VMR  +  S  +PPSP      +FD  CG+
Sbjct: 638 NQHLNGNYEKDNNVT--AIFLEDVMRP-SSNSAESPPSPNTSKAFIFDALCGK 687


>U97592-3|AAB52869.1|  304|Caenorhabditis elegans Hypothetical
           protein C14A11.2 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/21 (61%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 121 FSAVLPLE-KLPHFGHSDLNI 180
           FSA  PL   LPHF H DLN+
Sbjct: 89  FSARTPLHLDLPHFNHQDLNV 109


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 201 TPILIKKNIQITVSKVWKFFKRENG 127
           TP++IK+ I  T +KVWK   + +G
Sbjct: 529 TPVIIKEEIISTATKVWKKVDKTSG 553


>AF016653-2|AAC48225.2|  914|Caenorhabditis elegans Patched related
           family protein 3 protein.
          Length = 914

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -1

Query: 414 HGAKFKGISLGFHFTKLL-TELYIELQNFTQIELTLKN 304
           HG  F  + LG+  T +L T+LY++  NF  +++T  N
Sbjct: 162 HGTDFSHLDLGYPITTVLGTKLYMD-PNFFGVKVTTSN 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,173,980
Number of Sequences: 27780
Number of extensions: 283893
Number of successful extensions: 595
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)