Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b24f
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   7.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 523 HQYVPYDMLRCVI 485
           H + PYD+L C I
Sbjct: 163 HTWWPYDILNCTI 175


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +1

Query: 379 KTQTNSFELCTVKALLFHNRSEILQ 453
           KT+TN+  L ++  ++ H + +I++
Sbjct: 225 KTETNATVLHSINKVIIHPKYDIIE 249


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 617 AGIDRIECRTPPPRDPRGSAARCVIP 540
           A I R E RTP P D      R + P
Sbjct: 174 AQIRRNERRTPDPHDETAKKPRVLSP 199


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 593 DTRCGRYPHQ 622
           +TRCGRY +Q
Sbjct: 416 NTRCGRYHNQ 425


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 135 ENGTKQLV*F*GRLMIGRPNRLSR 64
           +NG  +L  F   ++IG PN + +
Sbjct: 190 KNGQPKLTDFGSSVLIGAPNEIDK 213


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,457
Number of Sequences: 438
Number of extensions: 3631
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)