Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b23r
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical pr...    30   2.3  
U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical pr...    30   2.3  

>U39649-3|AAM69070.1| 1538|Caenorhabditis elegans Hypothetical
           protein T23F2.2b protein.
          Length = 1538

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 545 PFNVMCNEDEPHTPS---LPLLTSIDKPETLTCSTNSLTILQ 661
           P +++ +  + H+PS   +PL+T  +K +T+ CS  +L  +Q
Sbjct: 355 PLSIIASHPDLHSPSPMMIPLVTGDNKNQTIYCSQEALNHIQ 396


>U39649-2|AAM69069.1| 1534|Caenorhabditis elegans Hypothetical
           protein T23F2.2a protein.
          Length = 1534

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 545 PFNVMCNEDEPHTPS---LPLLTSIDKPETLTCSTNSLTILQ 661
           P +++ +  + H+PS   +PL+T  +K +T+ CS  +L  +Q
Sbjct: 355 PLSIIASHPDLHSPSPMMIPLVTGDNKNQTIYCSQEALNHIQ 396


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,265,685
Number of Sequences: 27780
Number of extensions: 341708
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)