Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10b23f
(580 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 306 2e-84
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 229 2e-61
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 127 1e-30
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 104 8e-24
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 51 1e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 50 3e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 44 2e-05
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 43 4e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 40 2e-04
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 40 3e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 39 5e-04
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 39 6e-04
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 38 0.001
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 38 0.001
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.002
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 37 0.002
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 34 0.017
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.023
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 33 0.030
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 33 0.040
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 31 0.16
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 28 1.1
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 1.5
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 3.5
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 3.5
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 26 3.5
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.6
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 6.1
SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr 2|... 25 6.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 8.0
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 8.0
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 8.0
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.0
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 8.0
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 25 8.0
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 306 bits (751), Expect = 2e-84
Identities = 143/161 (88%), Positives = 152/161 (94%)
Frame = +1
Query: 97 MGNMFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 276
MG + LF+ LFGK+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+N
Sbjct: 1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRN 60
Query: 277 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAV 456
ISFTVWDVGGQDKIRPLWRHYFQNTQG+IFVVDSNDRERI EA EEL RML+EDELRDA+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDAL 120
Query: 457 LLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCAT 579
LL+FANKQDLPNAMNAAEITDKLGLHSLR+R WYIQATCAT
Sbjct: 121 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCAT 161
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 229 bits (561), Expect = 2e-61
Identities = 107/156 (68%), Positives = 125/156 (80%)
Frame = +1
Query: 109 FANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFT 288
F+ F LF KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F
Sbjct: 9 FSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFN 68
Query: 289 VWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIF 468
VWDVGGQDKIRPLWRHYF T+GLIFVVDS D RI EAR+EL R++S+ E+RD +LL+
Sbjct: 69 VWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVL 128
Query: 469 ANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCA 576
ANKQDLP A++ A+ITD L L L++R W +Q TCA
Sbjct: 129 ANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCA 164
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 127 bits (307), Expect = 1e-30
Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 315
++E+R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 316 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNA 495
+R W++YF++T+ +I+VVDS D R+ E R L +L E++L +L+ ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 496 MNAAEITDKLGLHSLRNRNWYIQATCA 576
+++ EI+ L + ++ +W I + A
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSA 159
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 104 bits (250), Expect = 8e-24
Identities = 51/131 (38%), Positives = 77/131 (58%)
Frame = +1
Query: 142 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 321
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 322 PLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPNAMN 501
LWR YF G++++VD D ER+ E++ EL +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 502 AAEITDKLGLH 534
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 50.8 bits (116), Expect = 1e-07
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 315
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 316 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 486
R + Y++ G+I V D D++ ++ L + + L+ NK D+
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 49.6 bits (113), Expect = 3e-07
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +1
Query: 148 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 312
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 313 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAR 408
+ R + Y++ G++ + D D++ R
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR 101
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 315
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 316 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 486
R + Y++ G + V D + L + L E + V+++ NK DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 42.7 bits (96), Expect = 4e-05
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Frame = +1
Query: 133 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 297
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 298 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANK 477
GQ++ R L Y +++ I V D + E+ + + + D ++++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIVLVGNK 125
Query: 478 QDL 486
DL
Sbjct: 126 TDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 40.3 bits (90), Expect = 2e-04
Identities = 21/76 (27%), Positives = 36/76 (47%)
Frame = +1
Query: 265 EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDEL 444
+ K I +WD GQ+K R + R+Y++ G + V D +++ E L + +
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 445 RDAVLLIFANKQDLPN 492
V+L +K DL N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 39.9 bits (89), Expect = 3e-04
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 312
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 313 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLSEDELRDAVLLIFANKQDLPN 492
+ + L Y++N I V D + +A+ ++ L V+ + NK DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 493 AMNAAEITD 519
A E D
Sbjct: 135 ERRAVEKAD 143
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 315
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 316 IRPLWRHYFQNTQGLIFVVDSNDR 387
+ L Y+ Q I + D R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 38.7 bits (86), Expect = 6e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +1
Query: 238 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER--IGEARE 411
T+G + + ++ ++DVGGQ R W + F+N +IF V ND ++ A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 412 ELMRMLSEDELRDAVL 459
E R++ L D+++
Sbjct: 239 ERNRLVESISLFDSII 254
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +1
Query: 232 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF----------VVDSN 381
I T G + ET + +DVGGQ R W H F+N L+F +V+ N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 382 DRERIGEAREELMRMLSEDELRDAVLLIFANKQDL 486
++ EA + + ++ +++F NK DL
Sbjct: 279 SGNQMQEALLLWDSICNSSWFSESAMILFLNKLDL 313
Score = 26.6 bits (56), Expect = 2.6
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +1
Query: 136 GKKEMRILMVGLDAAGKTTILYKLKL 213
G ++++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 37.5 bits (83), Expect = 0.001
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 10/127 (7%)
Frame = +1
Query: 136 GKKE--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 294
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 295 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDELRDAVLLI 465
D GQ++ + L +++ + V D N+ E + R+E + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 466 FANKQDL 486
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 37.1 bits (82), Expect = 0.002
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +1
Query: 148 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 312
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 313 KIRPLWRHYFQNTQGLIFVVDSNDRERIGEARE 411
+ + + ++F+ D + + + +E
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 36.7 bits (81), Expect = 0.002
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 318
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 319 RPLWRHYFQNTQGLI--FVVDSND 384
L + ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 33.9 bits (74), Expect = 0.017
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 312
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 313 KIRPLW-----RHYFQNTQGLIFVVDSNDRE 390
+ H F+N Q LI+V D RE
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.023
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 309
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 310 DKIRPL 327
D++RPL
Sbjct: 68 DRLRPL 73
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 33.1 bits (72), Expect = 0.030
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +1
Query: 151 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 318
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 319 RPLWRHYFQNTQGLI--FVVDSND 384
L + +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 32.7 bits (71), Expect = 0.040
Identities = 22/106 (20%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Frame = +1
Query: 148 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 312
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 313 KIRPLWRHYFQNTQGLIFVVDSNDR---ERIGEAREELMRMLSEDE 441
+ + L +++ + V + N+ + + R+E + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 30.7 bits (66), Expect = 0.16
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 8/151 (5%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKI 318
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 319 RPLWRHYFQ---NTQGLIFVVDSNDRER-IGEAREELMRMLSEDELRDAV-LLIFANKQD 483
+ F N + ++FV++S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 484 LPNAMNAAEITD--KLGLHS-LRNRNWYIQA 567
L A A +I K LH+ L +N +++
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEKNLQLES 182
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.1
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = -3
Query: 263 TVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPKRPLNKFANIFPILNYY 84
T T++P V + ++S N +L VVL + + +IN+ L ++ FA +FPI Y
Sbjct: 191 TTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL--FAVHWFA-LFPIFRKY 247
Query: 83 EYNF 72
+ F
Sbjct: 248 IHVF 251
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 133 FGKKEMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 297
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 154 ILMVGLDAAGKTTILYKLKL 213
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 142 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTI 243
KE+R+++ G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 118 LFKGLFGKKEMRILMVGLDAAGKTTI 195
L K ++GK+ + I+ +G AGK+T+
Sbjct: 229 LLKDMYGKEHVNIVFIGHVDAGKSTL 254
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 333 PPQWSDFVLASNIPHSKTNVFVFY 262
PP+ SDF++ S H + N F F+
Sbjct: 257 PPEVSDFLIKSFYGHVQANFFFFH 280
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = +1
Query: 382 DRERIGEAREELMRMLSEDELRDAVL----LIFANKQDLPNAMNAAEITDKLGLHSLRNR 549
D E+ + REE +R+L E +DA + + +DL + ++ A+++ K +S
Sbjct: 405 DEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDLKDDLSLADLSSKKTANSQATE 464
Query: 550 N 552
N
Sbjct: 465 N 465
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 100 GNMFANLFKGLFGKKEMRILMVG--LDAAGKTTI-LYKLKLGEIVTTIPTI 243
GN+FA L + ++ L G L+ + + + LKLGE + T+P I
Sbjct: 456 GNLFARLVSHVLHQRHFYPLFPGGSLEKCNPSNLDIAHLKLGEFLNTMPDI 506
>SPAC977.12 |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 323 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 201
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBPB8B6.05c |||L-asparaginase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 323 GLILSWPPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSL 201
G++++ S MFL T+ST KPIV +V + P+ ++
Sbjct: 119 GIVITHGTDSLEETAMFLDLTISTAKPIV-VVGAMRPSTAI 158
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKL 207
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 326 SGLILSWPPTSHTV-KLMFL 270
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 370 VDSNDRERIGEAREELMRMLSEDE 441
+DS++ E I +A+ E+ LSE+E
Sbjct: 430 IDSDEEETIDDAKSEMFVDLSEEE 453
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 139 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 246
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 8.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +1
Query: 220 IVTTIPTIGFNVETVEYKNISFTVW 294
I T P F+++ EY N+ VW
Sbjct: 237 IYFTFPVNSFSIDGCEYNNVKALVW 261
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 328 WRHYFQNTQGLIFVVDSNDRERI 396
W H++ NTQ FV D ND ++
Sbjct: 17 WTHFW-NTQESYFVYDPNDHAKV 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,483,425
Number of Sequences: 5004
Number of extensions: 52924
Number of successful extensions: 218
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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