Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b23f
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.54 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   6.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 305 PPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 132
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 295 DVGGQDKIRPLWRH 336
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 305 PPTSHTVKLMFLYSTVSTLKPIVGIVVTI 219
           PPTS  + L+  Y   + +   V I+VT+
Sbjct: 287 PPTSLVLPLIAKYLLFTFIMNTVSILVTV 315


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 16  ELLGIHWCCVFSLIRDCF 69
           EL+     C FSL+RD F
Sbjct: 385 ELMQETHVCFFSLLRDAF 402


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 131 RPLNKFANIFPILNYYEYNFQKQSR 57
           R L K  N+     Y++Y+F  + R
Sbjct: 26  RNLEKSLNVIHEWKYFDYDFGSEER 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,359
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)